[Rcolony-commits] r51 - pkg/man

[noreply at r-forge.r-project.org]

Author: jonesor
Date: 2009-05-12 13:27:50 +0200 (Tue, 12 May 2009)
New Revision: 51

Modified:
   pkg/man/build.colony.input.Rd
Log:
Removed offending table. Can't see what's wrong with it

Modified: pkg/man/build.colony.input.Rd
===================================================================
--- pkg/man/build.colony.input.Rd	2009-05-11 09:16:17 UTC (rev 50)
+++ pkg/man/build.colony.input.Rd	2009-05-12 11:27:50 UTC (rev 51)
@@ -46,30 +46,8 @@
 
  An example file of the allele frequency data is shown below.
 
-\tabular{rrrrrrrrrrrrrrrr}{
- 1 \tab 2 \tab 3 \tab 4 \tab 5 \tab 6 \tab 7 \tab 8 \tab 9 \tab 10 \tab 11 \tab 12 \tab  \tab  \tab  \tab \cr 
-0.1000 \tab 0.0600 \tab 0.0350 \tab 0.0700 \tab 0.0700 \tab 0.1400 \tab 0.1500 \tab 0.0550 \tab 0.0550 \tab 0.0250 \tab 0.1350 \tab 0.1050 \tab  \tab  \tab  \tab \cr 
-1 \tab 2 \tab 3 \tab 4 \tab 5 \tab 6 \tab 7 \tab 8 \tab 9 \tab 10 \tab 11 \tab 12 \tab 13 \tab  \tab  \tab \cr 
-0.0550 \tab 0.1000 \tab 0.0950 \tab 0.0400 \tab 0.0300 \tab 0.0550 \tab 0.0600 \tab 0.0950 \tab 0.1050 \tab 0.0800 \tab 0.1250 \tab 0.0900 \tab 0.0700\cr 
-1 \tab 2 \tab 3 \tab 4 \tab 5 \tab 6 \tab 7 \tab 8 \tab 9 \tab 10 \tab 11 \tab 12 \tab 13 \tab 14\cr 
-0.0350 \tab 0.0350 \tab 0.1150 \tab 0.0900 \tab 0.0550 \tab 0.1100 \tab 0.0800 \tab 0.0200 \tab 0.0400 \tab 0.1150 \tab 0.0550 \tab 0.1000 \tab 0.1100 \tab 0.0400\cr 
-1 \tab 2 \tab 3 \tab 4 \tab 5 \tab 6 \tab 7 \tab 8 \tab 9 \tab 10 \tab 11 \tab 12 \tab 13 \tab 14 \tab 15\cr 
-0.0800 \tab 0.0650 \tab 0.0600 \tab 0.0300 \tab 0.1250 \tab 0.0800 \tab 0.0500 \tab 0.0600 \tab 0.0900 \tab 0.0650 \tab 0.1250 \tab 0.0700 \tab 0.0500 \tab 0.0200 \tab 0.0300\cr 
-1 \tab 2 \tab 3 \tab 4 \tab 5 \tab 6 \tab 7 \tab 8 \tab 9 \tab 10 \tab 11 \tab 12 \tab 13 \tab 14 \tab 15 \tab 16\cr 
-0.0900 \tab 0.1500 \tab 0.0200 \tab 0.0500 \tab 0.0550 \tab 0.0750 \tab 0.0850 \tab 0.0650 \tab 0.0600 \tab 0.1000 \tab 0.0400 \tab 0.0550 \tab 0.0300 \tab 0.0400 \tab 0.0200 \tab 0.0650\cr 
-1 \tab 2 \tab 3 \tab 4 \tab 5 \tab 6 \tab 7 \tab 8 \tab 9 \tab 10 \tab 11 \tab 12 \tab  \tab  \tab  \tab \cr 
-0.1000 \tab 0.0600 \tab 0.0350 \tab 0.0700 \tab 0.0700 \tab 0.1400 \tab 0.1500 \tab 0.0550 \tab 0.0550 \tab 0.0250 \tab 0.1350 \tab 0.1050 \tab  \tab  \tab  \tab \cr 
-1 \tab 2 \tab 3 \tab 4 \tab 5 \tab 6 \tab 7 \tab 8 \tab 9 \tab 10 \tab 11 \tab 12 \tab 13 \tab  \tab  \tab \cr 
-0.0550 \tab 0.1000 \tab 0.0950 \tab 0.0400 \tab 0.0300 \tab 0.0550 \tab 0.0600 \tab 0.0950 \tab 0.1050 \tab 0.0800 \tab 0.1250 \tab 0.0900 \tab 0.0700\cr 
-1 \tab 2 \tab 3 \tab 4 \tab 5 \tab 6 \tab 7 \tab 8 \tab 9 \tab 10 \tab 11 \tab 12 \tab 13 \tab 14\cr 
-0.0350 \tab 0.0350 \tab 0.1150 \tab 0.0900 \tab 0.0550 \tab 0.1100 \tab 0.0800 \tab 0.0200 \tab 0.0400 \tab 0.1150 \tab 0.0550 \tab 0.1000 \tab 0.1100 \tab 0.0400\cr 
-1 \tab 2 \tab 3 \tab 4 \tab 5 \tab 6 \tab 7 \tab 8 \tab 9 \tab 10 \tab 11 \tab 12 \tab 13 \tab 14 \tab 15\cr 
-0.0800 \tab 0.0650 \tab 0.0600 \tab 0.0300 \tab 0.1250 \tab 0.0800 \tab 0.0500 \tab 0.0600 \tab 0.0900 \tab 0.0650 \tab 0.1250 \tab 0.0700 \tab 0.0500 \tab 0.0200 \tab 0.0300\cr 
-1 \tab 2 \tab 3 \tab 4 \tab 5 \tab 6 \tab 7 \tab 8 \tab 9 \tab 10 \tab 11 \tab 12 \tab 13 \tab 14 \tab 15 \tab 16\cr 
-0.0900 \tab 0.1500 \tab 0.0200 \tab 0.0500 \tab 0.0550 \tab 0.0750 \tab 0.0850 \tab 0.0650 \tab 0.0600 \tab 0.1000 \tab 0.0400 \tab 0.0550 \tab 0.0300 \tab 0.0400 \tab 0.0200 \tab 0.0650 
- 
-}
 
+
 Note that when allele frequencies are specified as known, the allele frequency file loaded should contain all alleles found in the offspring and candidate genotypes. Otherwise, an error occurs in running Colony. Note also that for a dominant locus, only two alleles are allowed and they are always indexed as 1 to indicate the dominant allele (presence of a band) and 2 to indicate the recessive allele (absence of a band when homozygous).
 
 The function will check the loaded file for number of loci, and that the frequencies are numeric rather than characters.