[Phylobase-devl] phylobase status

[Jombart, Thibaut]

Hi Ben, 

thanks for looking into this. About the printf/Rprintf thing, I've had to make the changes on other packages recently. If it's remained unnoticed thus far I'm afraid there's a good chance the CRAN maintainer will pick up on this soon. Sorry, I don't do C++ so can't make the changes.

Cheers

Thibaut


________________________________________
From: phylobase-devl-bounces at lists.r-forge.r-project.org [phylobase-devl-bounces at lists.r-forge.r-project.org] on behalf of Ben Bolker [bbolker at gmail.com]
Sent: 12 November 2012 14:42
To: phylobase-devl at lists.r-forge.r-project.org; Emmanuel Paradis
Subject: [Phylobase-devl] phylobase status

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  I spent a little while cleaning up some problems with phylobase (the
version on CRAN looks broken -- I don't know how long it's been that
way).  It now passes checks on my machine with a couple of NOTEs, one
about the size of the 'libs' directory (which we can't really do
anything about), and one about redirection of output to stdout and
stderr, which is frowned upon.

There appear to be 34 instances of this in the C++ code:

grep  "\(cout\|cerr\)" *.cpp | wc
     34     563    3761

  Is someone willing to spend an hour or so figuring out how to
replace these appropriately?  (section 6.5 of the R-exts manual says
to use Rprintf and REprintf)  This has gone under the radar so far,
but I can imagine CRAN (who have been getting stricter and stricter)
will complain about this when we resubmit.

  This is with ape 3.0-6; as I said, it otherwise tests clean on my
machine, we'll see whether R-Forge complains or not.

  Volunteers?

   cheers
     Ben

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