[Phylobase-devl] CRAN release

Jombart, Thibaut t.jombart at imperial.ac.uk
Wed Oct 28 09:52:19 CET 2009


Hi all, 

Friday as a release date sounds great. Congratulations to those who invested huge amounts of time in the recent developments/fixes of the package.

Best, 

Thibaut. 
________________________________________
From: phylobase-devl-bounces at lists.r-forge.r-project.org [phylobase-devl-bounces at lists.r-forge.r-project.org] On Behalf Of Peter Cowan [pdc at berkeley.edu]
Sent: 27 October 2009 20:07
To: François Michonneau; Phylobase Devs
Subject: Re: [Phylobase-devl] CRAN release

On Oct 27, 2009, at 8:25 AM, François Michonneau wrote:

>
>  I agree, I think we can do a beta release. I had started to go
> through
> the documentation some time ago, but it might be worthwhile to read
> over
> it again to make sure that there isn't anything left that is totally
> out
> of date.

I agree that the docs are in need of attention.  I fear that if we
wait for them to meet our standards it will delay the package greatly,
especially given everyones time constraints.

How about a code freeze, with Friday as the release date. That gives
us the rest of the week to burnish the docs and test for show-stopping
bugs.  In the meantime, I'll try to come up with a NEWS file.

Peter

>
>  Cheers,
>  -- François
>
> On Tue, 2009-10-27 at 10:40 -0400, Ben Bolker wrote:
>> sounds good to me.
>>  Thanks to Jim, Peter, and François for doing all the heavy lifting
>> during this phase ...
>>
>>  cheers
>>   Ben
>>
>> Jim Regetz wrote:
>>> Releasing sounds like a great idea to me! I absolute agree about
>>> having
>>> more eyes to uncover issues and such. Also, expanding the pool of
>>> folks
>>> who use and build on phylobase should be a positive force for
>>> setting
>>> development priorities.
>>>
>>> FYI, earlier today we discovered a problem with src/*.c files not
>>> being
>>> compiled during the Windows build process. I believe it was caused
>>> by an
>>> overly aggressive Makefile.win (created specifically for the ncl
>>> code),
>>> and have my fingers crossed that the switch to a Makevars.win will
>>> do
>>> the trick. It now builds properly for me on an XP VM with the
>>> Windows
>>> toolset, and I'll check to see how it fares during the next R-forge
>>> build/check cycle.
>>>
>>> Jim
>>>
>>> Peter Cowan wrote:
>>>> I suggest we do a beta release of phylobase to CRAN.  We seem to
>>>> have
>>>> tackled most of the architectural issues and bugs that we wanted
>>>> to.
>>>> This and a lack of time has caused development to be notably slower
>>>> over the last month.
>>>>
>>>> To the best of my knowledge all planned but unimplmented code,
>>>> falls
>>>> into the category of enhancements that would not break code
>>>> produced
>>>> w/ the current version.
>>>>
>>>> I think there would be great value in getting the package out to a
>>>> wider audience (just this week I was asked how to do things in ape
>>>> that are trivial w/ phylobase).  More eyes will make bugs and
>>>> gaps in
>>>> the documentation more obvious.  Furthermore, package developers
>>>> will
>>>> shy away from phylobase until it is available to them on CRAN.
>>>>
>>>> R-core has also just released 2.10.0 (which should make some mac
>>>> issues a bit better.)
>>>>
>>>> Any objections?
>>>>
>>>> Peter
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