[Phylobase-devl] Rcpp and OS X compiliation

[Hilmar Lapp]

Well, doesn't look suspicious at all, does it. Brian - that's of  
course assuming that you *are* running on an Intel Mac, not a PPC.  
Also, presumably it's all 32-bit compiled and R is 32-bit, or  
alternatively everything is 64bit compiled, including R?

I'm afraid I've run out of suggestions too...

	-hilmar

On Dec 15, 2009, at 5:12 PM, Brian O'Meara wrote:

>
> On Dec 15, 2009, at 5:02 PM, Hilmar Lapp wrote:
>
>> So what does file or otool say when you run it on the archive? Does
>> it confirm that it is the expected and desired architecture?
>>
>> 	-hilmar
>
>
> omearalab5:Sites bomeara$ otool -hv /Library/Frameworks/R.framework/
> Resources/library/Rcpp/lib/i386/libRcpp.a
> Archive : /Library/Frameworks/R.framework/Resources/library/Rcpp/lib/
> i386/libRcpp.a
> /Library/Frameworks/R.framework/Resources/library/Rcpp/lib/i386/
> libRcpp.a(Rcpp.o):
> Mach header
>       magic cputype cpusubtype  caps    filetype ncmds
> sizeofcmds      flags
>    MH_MAGIC    I386        ALL  0x00      OBJECT     3       1792
> SUBSECTIONS_VIA_SYMBOLS
> /Library/Frameworks/R.framework/Resources/library/Rcpp/lib/i386/
> libRcpp.a(RcppDate.o):
> Mach header
>       magic cputype cpusubtype  caps    filetype ncmds
> sizeofcmds      flags
>    MH_MAGIC    I386        ALL  0x00      OBJECT     3       1860
> SUBSECTIONS_VIA_SYMBOLS
> /Library/Frameworks/R.framework/Resources/library/Rcpp/lib/i386/
> libRcpp.a(RcppDatetime.o):
> Mach header
>       magic cputype cpusubtype  caps    filetype ncmds
> sizeofcmds      flags
>    MH_MAGIC    I386        ALL  0x00      OBJECT     3       1588
> SUBSECTIONS_VIA_SYMBOLS
> /Library/Frameworks/R.framework/Resources/library/Rcpp/lib/i386/
> libRcpp.a(RcppList.o):
> Mach header
>       magic cputype cpusubtype  caps    filetype ncmds
> sizeofcmds      flags
>    MH_MAGIC    I386        ALL  0x00      OBJECT     3       1792
> SUBSECTIONS_VIA_SYMBOLS
> /Library/Frameworks/R.framework/Resources/library/Rcpp/lib/i386/
> libRcpp.a(RcppParams.o):
> Mach header
>       magic cputype cpusubtype  caps    filetype ncmds
> sizeofcmds      flags
>    MH_MAGIC    I386        ALL  0x00      OBJECT     3       1792
> SUBSECTIONS_VIA_SYMBOLS
>
> omearalab5:src bomeara$ file /Library/Frameworks/R.framework/ 
> Resources/
> library/Rcpp/lib/i386/libRcpp.a
> /Library/Frameworks/R.framework/Resources/library/Rcpp/lib/i386/
> libRcpp.a: current ar archive
>
> I've also put a zipped version at <http://omearalab5.dyndns.org/~bomeara/libRcpp.a.zip
>> if you want to look at it.
>
> Thanks,
> Brian
>
>
>>
>> On Dec 15, 2009, at 4:37 PM, Dirk Eddelbuettel wrote:
>>
>>>
>>> On 15 December 2009 at 15:54, Hilmar Lapp wrote:
>>> | On Dec 15, 2009, at 3:26 PM, Brian O'Meara wrote:
>>> |
>>> | > PKG_LIBS=/Library/Frameworks/R.framework/Resources/library/Rcpp/
>>> lib/
>>> | > i386/libRcpp.a: No such file or directory"
>>> | > [...]
>>> | > even though /Library/Frameworks/R.framework/Resources/library/
>>> Rcpp/
>>> | > lib/i386/libRcpp.a clearly exists on my system:
>>> |
>>> |
>>> | Is it a given that libRcpp.a is of the right architecture, and has
>>> | been compiled with a compatible compiler version?
>>> |
>>> | I've sometimes got these things when it turned out after some
>>> digging
>>> | that that was not the case (even though the library itself was
>>> there).
>>>
>>> Good hunch.  As Brian and I check by looking at his 'R CMD INSTALL
>>> pkg' logs
>>> for Rcpp, it does build three times (i386, ppc, x86_64) but each
>>> time we do
>>>
>>> userLibrary: 	$(USERLIB) $(USERLIBST)
>>> 		- at if test ! -e $(USERDIR)$(R_ARCH); then mkdir -p $(USERDIR)$
>>> (R_ARCH); fi
>>> 		cp $(USERLIB) $(USERDIR)$(R_ARCH)
>>> 		cp Rcpp*.h $(USERDIR)$(R_ARCH)
>>> 		cp $(USERLIBST) $(USERDIR)$(R_ARCH)
>>> 		rm $(USERLIB) $(USERLIBST)
>>>
>>> USERLIB is the dynamic library, USERLIBST is the static library.
>>> This should
>>> rotate over the R_ARCH vales and copy appropriately.
>>>
>>> If someone has good OS X and wants to help Brian and myself...  I
>>> am at wit's
>>> end (but I no close to nada about OS X).
>>>
>>> Dirk
>>>
>>>
>>> -- 
>>> Three out of two people have difficulties with fractions.
>>
>> -- 
>> ===========================================================
>> : Hilmar Lapp  -:-  Durham, NC  -:- hlapp at duke dot edu :
>> ===========================================================
>>
>>
>>
>>
>
> ------------------------------------------------------
> Brian O'Meara
> http://www.brianomeara.info
> Assistant Prof.
> Dept. Ecology & Evolutionary Biology
> U. of Tennessee, Knoxville
>
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-- 
===========================================================
: Hilmar Lapp  -:-  Durham, NC  -:- hlapp at duke dot edu :
===========================================================