[Phylobase-devl] Plotting algorithms

[Ben Bolker]

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~ is FigTree public domain (java) ?


Brian O'Meara wrote:
| Paloverde (C, 3D): http://loco.biosci.arizona.edu/paloverde/paloverde.html
| Mesquite (Java): http://mesquiteproject.org/mesquite/mesquite.html
| Phylip drawtree/drawgram (C):
http://evolution.genetics.washington.edu/phylip/progs.algs.tree.html
| ouch (R) [yeah, it can draw trees]
| iTol: ( http://itol.embl.de/ ): it appears you can get the source code
| by request. It might also give you ideas of useful features (various
| ways of displaying info at nodes and tips)
| phylowidget (processing and others): http://www.phylowidget.org/ .
| Product of Phylogenetics summer of code last year.
|
| Brian
|
| On Jun 12, 2008, at 4:59 PM, Peter Cowan wrote:
|
|> Hi all,
|>
|> I've been poking around phylogenetic tree plotting algorithms that are
|> open source to compare approaches.  If you have ideas for code I could
|> learn from I'd like hear about it.  My language preferences are R >
|> matlab > python > c, but I'm curious to hear about any you know of.
|>
|> Here the list Steve and I came up with in a couple of mins.  What did
|> I miss?
|>
|> ade4
|> cactus
|> maverick
|> treeviewX
|>
|> Peter
|> _______________________________________________
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|>
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|
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