[Phylobase-devl] Plotting algorithms

[Brian O'Meara]

Paloverde (C, 3D): http://loco.biosci.arizona.edu/paloverde/paloverde.html
Mesquite (Java): http://mesquiteproject.org/mesquite/mesquite.html
Phylip drawtree/drawgram (C): http://evolution.genetics.washington.edu/phylip/progs.algs.tree.html
ouch (R) [yeah, it can draw trees]
iTol: ( http://itol.embl.de/ ): it appears you can get the source code  
by request. It might also give you ideas of useful features (various  
ways of displaying info at nodes and tips)
phylowidget (processing and others): http://www.phylowidget.org/ .  
Product of Phylogenetics summer of code last year.

Brian

On Jun 12, 2008, at 4:59 PM, Peter Cowan wrote:

> Hi all,
>
> I've been poking around phylogenetic tree plotting algorithms that are
> open source to compare approaches.  If you have ideas for code I could
> learn from I'd like hear about it.  My language preferences are R >
> matlab > python > c, but I'm curious to hear about any you know of.
>
> Here the list Steve and I came up with in a couple of mins.  What did
> I miss?
>
> ade4
> cactus
> maverick
> treeviewX
>
> Peter
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