[Phylobase-devl] labeling order

Ben Bolker bolker at ufl.edu
Sat Dec 27 21:01:50 CET 2008

Peter Cowan wrote:
>>  Hmm.
>>  I've been working to try to make everything consistent in node order
>> (as Steve suggested).  Thibaut/Marguerite, what do you suggest for the
>> case of unrooted trees?  Thibaut, how often do you match up edges with
>> data and labels?
>>   I've done a bunch of stuff, and I'd like to commit it, because it's
>> all reasonably consistent now, but I'd like to hear some more
>> conversation -- I'm willing to work back through while it's fresh in
>> my mind and do everything the opposite way (keeping everything
>> in edge-matrix order all the time), provided we know how to handle
>> unrooted trees (and are willing to live with not being able to handle
>> reticulations).
> If you want, we could easily make a branch that you could commit to,
> then we could have a look at how it works...

  OK.  ???

svn copy https://svn.r-forge.r-project.org/svnroot/phylobase/pkg
https://svn.r-forge.r-project.org/svnroot/phylobase/branches/newlabels ?

cd pkg
svn diff >../mypatch
cd ../branches/newlabels
patch -p0 < ../../mypatch


More information about the Phylobase-devl mailing list