[Phylobase-devl] [phylobase-Bugs][150] NCL tests fail on Mac OSX R 2.7.0

phylobase-bugs at r-forge.r-project.org phylobase-bugs at r-forge.r-project.org
Wed Dec 3 21:45:52 CET 2008

Bugs item #150, was opened at 2008-06-03 02:41
>Status: Closed
Priority: 3
Submitted By: Peter Cowan (pdc)
>Assigned to: Ben  Bolker (bbolker)
Summary: NCL tests fail on Mac OSX R 2.7.0 
Component: None
>Resolution: Fixed
Severity: None
Version: None
Operating System: None

Initial Comment:
R CMD check fails at the tests stage with the error:

 checking tests ...
  Running 'misctests.R'
  Running 'nexusdata.R'
make[1]: *** [nexusdata.Rout] Error 1
make: *** [all] Error 2
Running the tests in 'tests/nexusdata.R' failed.
Last 13 lines of output:
  Reading CHARACTERS block...
  Skipping unknown block (CHARACTERS2)
  Reading TREES block...
  Reading ASSUMPTIONS block...
  Skipping unknown block (MESQUITECHARMODELS)
  Skipping unknown block (MESQUITE)
  Skipping unknown block (brownie)
  Error in check_data(res, ...) : 
    Tip data names are a subset of tree tip labels 
  (missing data names: [&R],,,,,,,,,,) 
  (extra data names: Myrmecocystuscreightoni,Myrmecocystusdepilis,Myrmecocystuskennedyi,Myrmecocystusmendax,Myrmecocystusnavajo,Myrmecocystusnequazcatl,Myrmecocystusplacodops,Myrmecocystustenuinodis,Myrmecocystustestaceus,Myrmecocystuswheeleri,Myrmecocystusyuma)
  Calls: NexusToPhylo4D -> phylo4d -> phylo4d -> .local -> check_data
  Execution halted


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