[Phylobase-devl] How to build a tree progressively?

Sang Chul Choi choi at biology.rutgers.edu
Tue Apr 8 06:59:01 CEST 2008


Hi,

I think that this kind of works may not be a role of core package  
(i.e., phylobase). Users may have to or should do the job. I think  
that tree movement (tree topology updates in MCMC) may be implemented  
by users of phylobase, not in phylobase.

Thank you,

Sang Chul

On Apr 8, 2008, at 12:24 AM, Sang Chul Choi wrote:

> Hi,
>
> I am wondering if I could use phylobase to build a tree progressively.
> Starting with two nodes, I pick a branch to attach a node until there
> is no left nodes to attach. I went through phylobase help, but it
> seems to hard for me to figure out. I want something like:
>
> e.g., g is a phylo4 object.
>> g <- phylo4(g, node=10, edge=3)
>
> I will appreciate your input.
>
> Thank you,
>
> Sang Chul
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