[Phylobase-commits] r550 - pkg/man

[noreply at r-forge.r-project.org]

Author: pdc
Date: 2009-08-21 03:11:56 +0200 (Fri, 21 Aug 2009)
New Revision: 550

Modified:
   pkg/man/phylo4-class.Rd
Log:
document update for print('phylo4')

Modified: pkg/man/phylo4-class.Rd
===================================================================
--- pkg/man/phylo4-class.Rd	2009-08-21 00:28:46 UTC (rev 549)
+++ pkg/man/phylo4-class.Rd	2009-08-21 01:11:56 UTC (rev 550)
@@ -39,13 +39,16 @@
     \item{tail}{\code{signature(object = "phylo4")}: show last few nodes}  }
 }
 \usage{
-    \S4method{print}{phylo4}(x, printall)
+    \S4method{print}{phylo4}(x, edgeOrder = c("pretty", "real"), printall)
     \S4method{summary}{phylo4}(object, quiet=FALSE)
     \S4method{names}{phylo4}(x)
   }
   \arguments{
     \item{x}{a phylo4 object}
     \item{object}{a phylo4 object}
+    \item{edgeOrder}{Character string indicating whether the edges should be printed
+      as ordered in the tree "real" (e.g. preoder or postorder), or "pretty" printed 
+      with tips collated together}
     \item{printall}{If TRUE all tip labels are printed}
     \item{quiet}{a logical stating whether the results of the summary
       should be printed to the screen (FALSE, default) or not (TRUE)}