[Phylobase-commits] r498 - pkg/man

[noreply at r-forge.r-project.org]

Author: pdc
Date: 2009-08-19 02:50:25 +0200 (Wed, 19 Aug 2009)
New Revision: 498

Modified:
   pkg/man/subset-methods.Rd
Log:
subset methods doc update

Modified: pkg/man/subset-methods.Rd
===================================================================
--- pkg/man/subset-methods.Rd	2009-08-19 00:50:13 UTC (rev 497)
+++ pkg/man/subset-methods.Rd	2009-08-19 00:50:25 UTC (rev 498)
@@ -33,18 +33,14 @@
   Renamed from \code{drop.tip} to \code{prune} in order to
   avoid conflicts with ape.}
 \usage{
-\S4method{subset}{phylo4}(x,tips.include=NULL,tips.exclude=NULL,mrca=NULL,node.subtree=NULL,\dots)
+\S4method{subset}{phylo4}(x, \dots)
 
-\S4method{subset}{phylo4d}(x,tips.include=NULL,tips.exclude=NULL,mrca=NULL,node.subtree=NULL,\dots)
+\S4method{subset}{phylo4d}(x, \dots)
 
-\S4method{subset}{phylo}(x,tips.include=NULL,tips.exclude=NULL,mrca=NULL,node.subtree=NULL,\dots)
+\S4method{subset}{phylo}(x, \dots)
 }
 \arguments{
   \item{x}{an object of class \code{"phylo4"}, \code{"phylo"} or \code{"phylo4d"}}
-  \item{tips.include}{A vector containing tips to include in the pruned tree}
-  \item{tips.exclude}{A vector containing tips to exclude from the pruned tree}
-  \item{mrca}{Prune tree to include all descendants of the most recent common ancestor of the specified taxa}
-  \item{node.subtree}{Prune to all descendants of a specified node}
   \item{\dots}{further arguments to be passed to other methods}
 }
 \details{