[Phylobase-commits] r497 - pkg/man

[noreply at r-forge.r-project.org]

Author: pdc
Date: 2009-08-19 02:50:13 +0200 (Wed, 19 Aug 2009)
New Revision: 497

Modified:
   pkg/man/prune-methods.Rd
Log:
prune methods doc update

Modified: pkg/man/prune-methods.Rd
===================================================================
--- pkg/man/prune-methods.Rd	2009-08-19 00:47:53 UTC (rev 496)
+++ pkg/man/prune-methods.Rd	2009-08-19 00:50:13 UTC (rev 497)
@@ -25,12 +25,9 @@
     Renamed from \code{drop.tip} to \code{prune} in order to
     avoid conflicts with \code{ape}.}
   \usage{
-\S4method{prune}{phylo4}(phy, tip, trim.internal = TRUE, subtree = FALSE,
-                   root.edge = 0, \dots)
-\S4method{prune}{phylo4d}(phy, tip, trim.internal = TRUE, subtree = FALSE,
-                   root.edge = 0, \dots)
-\S4method{prune}{phylo}(phy, tip, trim.internal = TRUE, subtree = FALSE,
-                   root.edge = 0, \dots)
+\S4method{prune}{phylo4}(phy, tip, trim.internal = TRUE, subtree = FALSE, \dots)
+\S4method{prune}{phylo4d}(phy, tip, trim.internal = TRUE, subtree = FALSE, \dots)
+\S4method{prune}{phylo}(phy, tip, trim.internal = TRUE, subtree = FALSE, \dots)
 DropTip(phy, tip, \dots)
 }
 \arguments{
@@ -41,9 +38,6 @@
     corresponding internal branches}
   \item{subtree}{a logical specifying whether to output in the tree how
     many tips have been deleted and where}
-  \item{root.edge}{an integer giving the number of internal branches to
-    be used to build the new root edge. This has no effect if
-    \code{trim.internal = FALSE}}
   \item{\dots}{additional arguments}
 }
 \details{