[Patchwork-commits] r34 - in pkg: . patchworkData patchworkData/data patchworkData/man
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Wed Nov 30 17:02:48 CET 2011
Author: sebastian_d
Date: 2011-11-30 17:02:48 +0100 (Wed, 30 Nov 2011)
New Revision: 34
Added:
pkg/patchworkData/
pkg/patchworkData/._.DS_Store
pkg/patchworkData/.de0ea6.000/
pkg/patchworkData/DESCRIPTION
pkg/patchworkData/data/
pkg/patchworkData/data/chr1.mark.RData
pkg/patchworkData/data/chr10.mark.RData
pkg/patchworkData/data/chr11.mark.RData
pkg/patchworkData/data/chr12.mark.RData
pkg/patchworkData/data/chr13.mark.RData
pkg/patchworkData/data/chr14.mark.RData
pkg/patchworkData/data/chr15.mark.RData
pkg/patchworkData/data/chr16.mark.RData
pkg/patchworkData/data/chr17.mark.RData
pkg/patchworkData/data/chr18.mark.RData
pkg/patchworkData/data/chr19.mark.RData
pkg/patchworkData/data/chr2.mark.RData
pkg/patchworkData/data/chr20.mark.RData
pkg/patchworkData/data/chr21.mark.RData
pkg/patchworkData/data/chr22.mark.RData
pkg/patchworkData/data/chr3.mark.RData
pkg/patchworkData/data/chr4.mark.RData
pkg/patchworkData/data/chr5.mark.RData
pkg/patchworkData/data/chr6.mark.RData
pkg/patchworkData/data/chr7.mark.RData
pkg/patchworkData/data/chr8.mark.RData
pkg/patchworkData/data/chr9.mark.RData
pkg/patchworkData/data/chrX.mark.RData
pkg/patchworkData/data/chrY.mark.RData
pkg/patchworkData/data/commonSnps132.RData
pkg/patchworkData/data/datalist
pkg/patchworkData/data/datasolexa.RData
pkg/patchworkData/data/datasolid.RData
pkg/patchworkData/data/ideogram.RData
pkg/patchworkData/man/
pkg/patchworkData/man/chr1.mark.Rd
pkg/patchworkData/man/chr10.mark.Rd
pkg/patchworkData/man/chr11.mark.Rd
pkg/patchworkData/man/chr12.mark.Rd
pkg/patchworkData/man/chr13.mark.Rd
pkg/patchworkData/man/chr14.mark.Rd
pkg/patchworkData/man/chr15.mark.Rd
pkg/patchworkData/man/chr16.mark.Rd
pkg/patchworkData/man/chr17.mark.Rd
pkg/patchworkData/man/chr18.mark.Rd
pkg/patchworkData/man/chr19.mark.Rd
pkg/patchworkData/man/chr2.mark.Rd
pkg/patchworkData/man/chr20.mark.Rd
pkg/patchworkData/man/chr21.mark.Rd
pkg/patchworkData/man/chr22.mark.Rd
pkg/patchworkData/man/chr3.mark.Rd
pkg/patchworkData/man/chr4.mark.Rd
pkg/patchworkData/man/chr5.mark.Rd
pkg/patchworkData/man/chr6.mark.Rd
pkg/patchworkData/man/chr7.mark.Rd
pkg/patchworkData/man/chr8.mark.Rd
pkg/patchworkData/man/chr9.mark.Rd
pkg/patchworkData/man/chrX.mark.Rd
pkg/patchworkData/man/chrY.mark.Rd
pkg/patchworkData/man/commonSnps132.Rd
pkg/patchworkData/man/datasolexa.Rd
pkg/patchworkData/man/datasolid.Rd
pkg/patchworkData/man/ideogram.Rd
Removed:
pkg/patchwork/
Log:
initial recommit
Added: pkg/patchworkData/._.DS_Store
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+ application/octet-stream
Added: pkg/patchworkData/DESCRIPTION
===================================================================
--- pkg/patchworkData/DESCRIPTION (rev 0)
+++ pkg/patchworkData/DESCRIPTION 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,12 @@
+Package: patchworkData
+Type: Package
+Title: Data for patchwork package.
+Version: 2.0
+Date: 2011-10-13
+Author: Markus Rasmussen, Sebastian DiLorenzo
+Maintainer: Markus Rasmussen <Markus.Rasmussen at medsci.uu.se>
+Description: The data needed to perform patchwork functions.
+License: GPL-2
+LazyLoad: no
+#LazyData: yes
+Depends: R (>= 2.10)
Added: pkg/patchworkData/data/chr1.mark.RData
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+ application/octet-stream
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+ application/octet-stream
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===================================================================
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Added: svn:mime-type
+ application/octet-stream
Added: pkg/patchworkData/data/datalist
===================================================================
--- pkg/patchworkData/data/datalist (rev 0)
+++ pkg/patchworkData/data/datalist 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,28 @@
+chr1.mark: gc
+chr10.mark: gc
+chr11.mark: gc
+chr12.mark: gc
+chr13.mark: gc
+chr14.mark: gc
+chr15.mark: gc
+chr16.mark: gc
+chr17.mark: gc
+chr18.mark: gc
+chr19.mark: gc
+chr2.mark: gc
+chr20.mark: gc
+chr21.mark: gc
+chr22.mark: gc
+chr3.mark: gc
+chr4.mark: gc
+chr5.mark: gc
+chr6.mark: gc
+chr7.mark: gc
+chr8.mark: gc
+chr9.mark: gc
+chrX.mark: gc
+chrY.mark: gc
+commonSnps132: dbSnp
+datasolexa
+datasolid
+ideogram
Added: pkg/patchworkData/data/datasolexa.RData
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Added: svn:mime-type
+ application/octet-stream
Added: pkg/patchworkData/data/datasolid.RData
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___________________________________________________________________
Added: svn:mime-type
+ application/octet-stream
Added: pkg/patchworkData/data/ideogram.RData
===================================================================
(Binary files differ)
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___________________________________________________________________
Added: svn:mime-type
+ application/octet-stream
Added: pkg/patchworkData/man/chr1.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr1.mark.Rd (rev 0)
+++ pkg/patchworkData/man/chr1.mark.Rd 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,42 @@
+\name{chr1.mark}
+\alias{chr1.mark}
+\docType{data}
+
+\title{
+GC content data for chromosome 1.
+}
+
+\description{
+GC content data for chromosome 1.
+Loaded during patchwork.readChroms.
+}
+
+
+\usage{chr1.mark}
+
+\format{
+ A data frame with the following 4 variables.
+ \describe{
+ \item{pos}{position on chromosome}
+ \item{gc250}{gc content in a 250 base window}
+ \item{gc1000}{gc content in a 1000 base window}
+ \item{gcMb}{gc content in a one million base window (not in use)}
+ }
+}
+
+\details{
+gcMb is not in use at the moment.
+}
+
+%\source{
+% \url{http://www.}
+%}
+
+\seealso{
+ The function \code{\link{patchwork.readChroms}} uses this data.
+}
+
+%\examples{
+%}
+
+%\keyword{datasets}
Added: pkg/patchworkData/man/chr10.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr10.mark.Rd (rev 0)
+++ pkg/patchworkData/man/chr10.mark.Rd 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,42 @@
+\name{chr10.mark}
+\alias{chr10.mark}
+\docType{data}
+
+\title{
+GC content data for chromosome 10.
+}
+
+\description{
+GC content data for chromosome 10.
+Loaded during patchwork.readChroms.
+}
+
+
+\usage{chr10.mark}
+
+\format{
+ A data frame with the following 4 variables.
+ \describe{
+ \item{pos}{position on chromosome}
+ \item{gc250}{gc content in a 250 base window}
+ \item{gc1000}{gc content in a 1000 base window}
+ \item{gcMb}{gc content in a one million base window (not in use)}
+ }
+}
+
+\details{
+gcMb is not in use at the moment.
+}
+
+%\source{
+% \url{http://www.}
+%}
+
+\seealso{
+ The function \code{\link{patchwork.readChroms}} uses this data.
+}
+
+%\examples{
+%}
+
+%\keyword{datasets}
\ No newline at end of file
Added: pkg/patchworkData/man/chr11.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr11.mark.Rd (rev 0)
+++ pkg/patchworkData/man/chr11.mark.Rd 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,42 @@
+\name{chr11.mark}
+\alias{chr11.mark}
+\docType{data}
+
+\title{
+GC content data for chromosome 11.
+}
+
+\description{
+GC content data for chromosome 11.
+Loaded during patchwork.readChroms.
+}
+
+
+\usage{chr11.mark}
+
+\format{
+ A data frame with the following 4 variables.
+ \describe{
+ \item{pos}{position on chromosome}
+ \item{gc250}{gc content in a 250 base window}
+ \item{gc1000}{gc content in a 1000 base window}
+ \item{gcMb}{gc content in a one million base window (not in use)}
+ }
+}
+
+\details{
+gcMb is not in use at the moment.
+}
+
+%\source{
+% \url{http://www.}
+%}
+
+\seealso{
+ The function \code{\link{patchwork.readChroms}} uses this data.
+}
+
+%\examples{
+%}
+
+%\keyword{datasets}
\ No newline at end of file
Added: pkg/patchworkData/man/chr12.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr12.mark.Rd (rev 0)
+++ pkg/patchworkData/man/chr12.mark.Rd 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,42 @@
+\name{chr12.mark}
+\alias{chr12.mark}
+\docType{data}
+
+\title{
+GC content data for chromosome 12.
+}
+
+\description{
+GC content data for chromosome 12.
+Loaded during patchwork.readChroms.
+}
+
+
+\usage{chr12.mark}
+
+\format{
+ A data frame with the following 4 variables.
+ \describe{
+ \item{pos}{position on chromosome}
+ \item{gc250}{gc content in a 250 base window}
+ \item{gc1000}{gc content in a 1000 base window}
+ \item{gcMb}{gc content in a one million base window (not in use)}
+ }
+}
+
+\details{
+gcMb is not in use at the moment.
+}
+
+%\source{
+% \url{http://www.}
+%}
+
+\seealso{
+ The function \code{\link{patchwork.readChroms}} uses this data.
+}
+
+%\examples{
+%}
+
+%\keyword{datasets}
\ No newline at end of file
Added: pkg/patchworkData/man/chr13.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr13.mark.Rd (rev 0)
+++ pkg/patchworkData/man/chr13.mark.Rd 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,42 @@
+\name{chr13.mark}
+\alias{chr13.mark}
+\docType{data}
+
+\title{
+GC content data for chromosome 13.
+}
+
+\description{
+GC content data for chromosome 13.
+Loaded during patchwork.readChroms.
+}
+
+
+\usage{chr13.mark}
+
+\format{
+ A data frame with the following 4 variables.
+ \describe{
+ \item{pos}{position on chromosome}
+ \item{gc250}{gc content in a 250 base window}
+ \item{gc1000}{gc content in a 1000 base window}
+ \item{gcMb}{gc content in a one million base window (not in use)}
+ }
+}
+
+\details{
+gcMb is not in use at the moment.
+}
+
+%\source{
+% \url{http://www.}
+%}
+
+\seealso{
+ The function \code{\link{patchwork.readChroms}} uses this data.
+}
+
+%\examples{
+%}
+
+%\keyword{datasets}
\ No newline at end of file
Added: pkg/patchworkData/man/chr14.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr14.mark.Rd (rev 0)
+++ pkg/patchworkData/man/chr14.mark.Rd 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,42 @@
+\name{chr14.mark}
+\alias{chr14.mark}
+\docType{data}
+
+\title{
+GC content data for chromosome 14.
+}
+
+\description{
+GC content data for chromosome 14.
+Loaded during patchwork.readChroms.
+}
+
+
+\usage{chr14.mark}
+
+\format{
+ A data frame with the following 4 variables.
+ \describe{
+ \item{pos}{position on chromosome}
+ \item{gc250}{gc content in a 250 base window}
+ \item{gc1000}{gc content in a 1000 base window}
+ \item{gcMb}{gc content in a one million base window (not in use)}
+ }
+}
+
+\details{
+gcMb is not in use at the moment.
+}
+
+%\source{
+% \url{http://www.}
+%}
+
+\seealso{
+ The function \code{\link{patchwork.readChroms}} uses this data.
+}
+
+%\examples{
+%}
+
+%\keyword{datasets}
\ No newline at end of file
Added: pkg/patchworkData/man/chr15.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr15.mark.Rd (rev 0)
+++ pkg/patchworkData/man/chr15.mark.Rd 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,42 @@
+\name{chr15.mark}
+\alias{chr15.mark}
+\docType{data}
+
+\title{
+GC content data for chromosome 15.
+}
+
+\description{
+GC content data for chromosome 15.
+Loaded during patchwork.readChroms.
+}
+
+
+\usage{chr15.mark}
+
+\format{
+ A data frame with the following 4 variables.
+ \describe{
+ \item{pos}{position on chromosome}
+ \item{gc250}{gc content in a 250 base window}
+ \item{gc1000}{gc content in a 1000 base window}
+ \item{gcMb}{gc content in a one million base window (not in use)}
+ }
+}
+
+\details{
+gcMb is not in use at the moment.
+}
+
+%\source{
+% \url{http://www.}
+%}
+
+\seealso{
+ The function \code{\link{patchwork.readChroms}} uses this data.
+}
+
+%\examples{
+%}
+
+%\keyword{datasets}
\ No newline at end of file
Added: pkg/patchworkData/man/chr16.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr16.mark.Rd (rev 0)
+++ pkg/patchworkData/man/chr16.mark.Rd 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,42 @@
+\name{chr16.mark}
+\alias{chr16.mark}
+\docType{data}
+
+\title{
+GC content data for chromosome 16.
+}
+
+\description{
+GC content data for chromosome 16.
+Loaded during patchwork.readChroms.
+}
+
+
+\usage{chr16.mark}
+
+\format{
+ A data frame with the following 4 variables.
+ \describe{
+ \item{pos}{position on chromosome}
+ \item{gc250}{gc content in a 250 base window}
+ \item{gc1000}{gc content in a 1000 base window}
+ \item{gcMb}{gc content in a one million base window (not in use)}
+ }
+}
+
+\details{
+gcMb is not in use at the moment.
+}
+
+%\source{
+% \url{http://www.}
+%}
+
+\seealso{
+ The function \code{\link{patchwork.readChroms}} uses this data.
+}
+
+%\examples{
+%}
+
+%\keyword{datasets}
\ No newline at end of file
Added: pkg/patchworkData/man/chr17.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr17.mark.Rd (rev 0)
+++ pkg/patchworkData/man/chr17.mark.Rd 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,42 @@
+\name{chr17.mark}
+\alias{chr17.mark}
+\docType{data}
+
+\title{
+GC content data for chromosome 17.
+}
+
+\description{
+GC content data for chromosome 17.
+Loaded during patchwork.readChroms.
+}
+
+
+\usage{chr17.mark}
+
+\format{
+ A data frame with the following 4 variables.
+ \describe{
+ \item{pos}{position on chromosome}
+ \item{gc250}{gc content in a 250 base window}
+ \item{gc1000}{gc content in a 1000 base window}
+ \item{gcMb}{gc content in a one million base window (not in use)}
+ }
+}
+
+\details{
+gcMb is not in use at the moment.
+}
+
+%\source{
+% \url{http://www.}
+%}
+
+\seealso{
+ The function \code{\link{patchwork.readChroms}} uses this data.
+}
+
+%\examples{
+%}
+
+%\keyword{datasets}
\ No newline at end of file
Added: pkg/patchworkData/man/chr18.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr18.mark.Rd (rev 0)
+++ pkg/patchworkData/man/chr18.mark.Rd 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,42 @@
+\name{chr18.mark}
+\alias{chr18.mark}
+\docType{data}
+
+\title{
+GC content data for chromosome 18.
+}
+
+\description{
+GC content data for chromosome 18.
+Loaded during patchwork.readChroms.
+}
+
+
+\usage{chr18.mark}
+
+\format{
+ A data frame with the following 4 variables.
+ \describe{
+ \item{pos}{position on chromosome}
+ \item{gc250}{gc content in a 250 base window}
+ \item{gc1000}{gc content in a 1000 base window}
+ \item{gcMb}{gc content in a one million base window (not in use)}
+ }
+}
+
+\details{
+gcMb is not in use at the moment.
+}
+
+%\source{
+% \url{http://www.}
+%}
+
+\seealso{
+ The function \code{\link{patchwork.readChroms}} uses this data.
+}
+
+%\examples{
+%}
+
+%\keyword{datasets}
\ No newline at end of file
Added: pkg/patchworkData/man/chr19.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr19.mark.Rd (rev 0)
+++ pkg/patchworkData/man/chr19.mark.Rd 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,42 @@
+\name{chr19.mark}
+\alias{chr19.mark}
+\docType{data}
+
+\title{
+GC content data for chromosome 19.
+}
+
+\description{
+GC content data for chromosome 19.
+Loaded during patchwork.readChroms.
+}
+
+
+\usage{chr19.mark}
+
+\format{
+ A data frame with the following 4 variables.
+ \describe{
+ \item{pos}{position on chromosome}
+ \item{gc250}{gc content in a 250 base window}
+ \item{gc1000}{gc content in a 1000 base window}
+ \item{gcMb}{gc content in a one million base window (not in use)}
+ }
+}
+
+\details{
+gcMb is not in use at the moment.
+}
+
+%\source{
+% \url{http://www.}
+%}
+
+\seealso{
+ The function \code{\link{patchwork.readChroms}} uses this data.
+}
+
+%\examples{
+%}
+
+%\keyword{datasets}
\ No newline at end of file
Added: pkg/patchworkData/man/chr2.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr2.mark.Rd (rev 0)
+++ pkg/patchworkData/man/chr2.mark.Rd 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,42 @@
+\name{chr2.mark}
+\alias{chr2.mark}
+\docType{data}
+
+\title{
+GC content data for chromosome 2.
+}
+
+\description{
+GC content data for chromosome 2.
+Loaded during patchwork.readChroms.
+}
+
+
+\usage{chr2.mark}
+
+\format{
+ A data frame with the following 4 variables.
+ \describe{
+ \item{pos}{position on chromosome}
+ \item{gc250}{gc content in a 250 base window}
+ \item{gc1000}{gc content in a 1000 base window}
+ \item{gcMb}{gc content in a one million base window (not in use)}
+ }
+}
+
+\details{
+gcMb is not in use at the moment.
+}
+
+%\source{
+% \url{http://www.}
+%}
+
+\seealso{
+ The function \code{\link{patchwork.readChroms}} uses this data.
+}
+
+%\examples{
+%}
+
+%\keyword{datasets}
\ No newline at end of file
Added: pkg/patchworkData/man/chr20.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr20.mark.Rd (rev 0)
+++ pkg/patchworkData/man/chr20.mark.Rd 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,42 @@
+\name{chr20.mark}
+\alias{chr20.mark}
+\docType{data}
+
+\title{
+GC content data for chromosome 20.
+}
+
+\description{
+GC content data for chromosome 20.
+Loaded during patchwork.readChroms.
+}
+
+
+\usage{chr20.mark}
+
+\format{
+ A data frame with the following 4 variables.
+ \describe{
+ \item{pos}{position on chromosome}
+ \item{gc250}{gc content in a 250 base window}
+ \item{gc1000}{gc content in a 1000 base window}
+ \item{gcMb}{gc content in a one million base window (not in use)}
+ }
+}
+
+\details{
+gcMb is not in use at the moment.
+}
+
+%\source{
+% \url{http://www.}
+%}
+
+\seealso{
+ The function \code{\link{patchwork.readChroms}} uses this data.
+}
+
+%\examples{
+%}
+
+%\keyword{datasets}
\ No newline at end of file
Added: pkg/patchworkData/man/chr21.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr21.mark.Rd (rev 0)
+++ pkg/patchworkData/man/chr21.mark.Rd 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,42 @@
+\name{chr21.mark}
+\alias{chr21.mark}
+\docType{data}
+
+\title{
+GC content data for chromosome 21.
+}
+
+\description{
+GC content data for chromosome 21.
+Loaded during patchwork.readChroms.
+}
+
+
+\usage{chr21.mark}
+
+\format{
+ A data frame with the following 4 variables.
+ \describe{
+ \item{pos}{position on chromosome}
+ \item{gc250}{gc content in a 250 base window}
+ \item{gc1000}{gc content in a 1000 base window}
+ \item{gcMb}{gc content in a one million base window (not in use)}
+ }
+}
+
+\details{
+gcMb is not in use at the moment.
+}
+
+%\source{
+% \url{http://www.}
+%}
+
+\seealso{
+ The function \code{\link{patchwork.readChroms}} uses this data.
+}
+
+%\examples{
+%}
+
+%\keyword{datasets}
\ No newline at end of file
Added: pkg/patchworkData/man/chr22.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr22.mark.Rd (rev 0)
+++ pkg/patchworkData/man/chr22.mark.Rd 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,42 @@
+\name{chr22.mark}
+\alias{chr22.mark}
+\docType{data}
+
+\title{
+GC content data for chromosome 22.
+}
+
+\description{
+GC content data for chromosome 22.
+Loaded during patchwork.readChroms.
+}
+
+
+\usage{chr22.mark}
+
+\format{
+ A data frame with the following 4 variables.
+ \describe{
+ \item{pos}{position on chromosome}
+ \item{gc250}{gc content in a 250 base window}
+ \item{gc1000}{gc content in a 1000 base window}
+ \item{gcMb}{gc content in a one million base window (not in use)}
+ }
+}
+
+\details{
+gcMb is not in use at the moment.
+}
+
+%\source{
+% \url{http://www.}
+%}
+
+\seealso{
+ The function \code{\link{patchwork.readChroms}} uses this data.
+}
+
+%\examples{
+%}
+
+%\keyword{datasets}
\ No newline at end of file
Added: pkg/patchworkData/man/chr3.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr3.mark.Rd (rev 0)
+++ pkg/patchworkData/man/chr3.mark.Rd 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,42 @@
+\name{chr3.mark}
+\alias{chr3.mark}
+\docType{data}
+
+\title{
+GC content data for chromosome 3.
+}
+
+\description{
+GC content data for chromosome 3.
+Loaded during patchwork.readChroms.
+}
+
+
+\usage{chr3.mark}
+
+\format{
+ A data frame with the following 4 variables.
+ \describe{
+ \item{pos}{position on chromosome}
+ \item{gc250}{gc content in a 250 base window}
+ \item{gc1000}{gc content in a 1000 base window}
+ \item{gcMb}{gc content in a one million base window (not in use)}
+ }
+}
+
+\details{
+gcMb is not in use at the moment.
+}
+
+%\source{
+% \url{http://www.}
+%}
+
+\seealso{
+ The function \code{\link{patchwork.readChroms}} uses this data.
+}
+
+%\examples{
+%}
+
+%\keyword{datasets}
\ No newline at end of file
Added: pkg/patchworkData/man/chr4.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr4.mark.Rd (rev 0)
+++ pkg/patchworkData/man/chr4.mark.Rd 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,42 @@
+\name{chr4.mark}
+\alias{chr4.mark}
+\docType{data}
+
+\title{
+GC content data for chromosome 4.
+}
+
+\description{
+GC content data for chromosome 4.
+Loaded during patchwork.readChroms.
+}
+
+
+\usage{chr4.mark}
+
+\format{
+ A data frame with the following 4 variables.
+ \describe{
+ \item{pos}{position on chromosome}
+ \item{gc250}{gc content in a 250 base window}
+ \item{gc1000}{gc content in a 1000 base window}
+ \item{gcMb}{gc content in a one million base window (not in use)}
+ }
+}
+
+\details{
+gcMb is not in use at the moment.
+}
+
+%\source{
+% \url{http://www.}
+%}
+
+\seealso{
+ The function \code{\link{patchwork.readChroms}} uses this data.
+}
+
+%\examples{
+%}
+
+%\keyword{datasets}
\ No newline at end of file
Added: pkg/patchworkData/man/chr5.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr5.mark.Rd (rev 0)
+++ pkg/patchworkData/man/chr5.mark.Rd 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,42 @@
+\name{chr5.mark}
+\alias{chr5.mark}
+\docType{data}
+
+\title{
+GC content data for chromosome 5.
+}
+
+\description{
+GC content data for chromosome 5.
+Loaded during patchwork.readChroms.
+}
+
+
+\usage{chr5.mark}
+
+\format{
+ A data frame with the following 4 variables.
+ \describe{
+ \item{pos}{position on chromosome}
+ \item{gc250}{gc content in a 250 base window}
+ \item{gc1000}{gc content in a 1000 base window}
+ \item{gcMb}{gc content in a one million base window (not in use)}
+ }
+}
+
+\details{
+gcMb is not in use at the moment.
+}
+
+%\source{
+% \url{http://www.}
+%}
+
+\seealso{
+ The function \code{\link{patchwork.readChroms}} uses this data.
+}
+
+%\examples{
+%}
+
+%\keyword{datasets}
\ No newline at end of file
Added: pkg/patchworkData/man/chr6.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr6.mark.Rd (rev 0)
+++ pkg/patchworkData/man/chr6.mark.Rd 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,42 @@
+\name{chr6.mark}
+\alias{chr6.mark}
+\docType{data}
+
+\title{
+GC content data for chromosome 6.
+}
+
+\description{
+GC content data for chromosome 6.
+Loaded during patchwork.readChroms.
+}
+
+
+\usage{chr6.mark}
+
+\format{
+ A data frame with the following 4 variables.
+ \describe{
+ \item{pos}{position on chromosome}
+ \item{gc250}{gc content in a 250 base window}
+ \item{gc1000}{gc content in a 1000 base window}
+ \item{gcMb}{gc content in a one million base window (not in use)}
+ }
+}
+
+\details{
+gcMb is not in use at the moment.
+}
+
+%\source{
+% \url{http://www.}
+%}
+
+\seealso{
+ The function \code{\link{patchwork.readChroms}} uses this data.
+}
+
+%\examples{
+%}
+
+%\keyword{datasets}
\ No newline at end of file
Added: pkg/patchworkData/man/chr7.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr7.mark.Rd (rev 0)
+++ pkg/patchworkData/man/chr7.mark.Rd 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,42 @@
+\name{chr7.mark}
+\alias{chr7.mark}
+\docType{data}
+
+\title{
+GC content data for chromosome 7.
+}
+
+\description{
+GC content data for chromosome 7.
+Loaded during patchwork.readChroms.
+}
+
+
+\usage{chr7.mark}
+
+\format{
+ A data frame with the following 4 variables.
+ \describe{
+ \item{pos}{position on chromosome}
+ \item{gc250}{gc content in a 250 base window}
+ \item{gc1000}{gc content in a 1000 base window}
+ \item{gcMb}{gc content in a one million base window (not in use)}
+ }
+}
+
+\details{
+gcMb is not in use at the moment.
+}
+
+%\source{
+% \url{http://www.}
+%}
+
+\seealso{
+ The function \code{\link{patchwork.readChroms}} uses this data.
+}
+
+%\examples{
+%}
+
+%\keyword{datasets}
\ No newline at end of file
Added: pkg/patchworkData/man/chr8.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr8.mark.Rd (rev 0)
+++ pkg/patchworkData/man/chr8.mark.Rd 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,42 @@
+\name{chr8.mark}
+\alias{chr8.mark}
+\docType{data}
+
+\title{
+GC content data for chromosome 8.
+}
+
+\description{
+GC content data for chromosome 8.
+Loaded during patchwork.readChroms.
+}
+
+
+\usage{chr8.mark}
+
+\format{
+ A data frame with the following 4 variables.
+ \describe{
+ \item{pos}{position on chromosome}
+ \item{gc250}{gc content in a 250 base window}
+ \item{gc1000}{gc content in a 1000 base window}
+ \item{gcMb}{gc content in a one million base window (not in use)}
+ }
+}
+
+\details{
+gcMb is not in use at the moment.
+}
+
+%\source{
+% \url{http://www.}
+%}
+
+\seealso{
+ The function \code{\link{patchwork.readChroms}} uses this data.
+}
+
+%\examples{
+%}
+
+%\keyword{datasets}
\ No newline at end of file
Added: pkg/patchworkData/man/chr9.mark.Rd
===================================================================
--- pkg/patchworkData/man/chr9.mark.Rd (rev 0)
+++ pkg/patchworkData/man/chr9.mark.Rd 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,42 @@
+\name{chr9.mark}
+\alias{chr9.mark}
+\docType{data}
+
+\title{
+GC content data for chromosome 9.
+}
+
+\description{
+GC content data for chromosome 9.
+Loaded during patchwork.readChroms.
+}
+
+
+\usage{chr9.mark}
+
+\format{
+ A data frame with the following 4 variables.
+ \describe{
+ \item{pos}{position on chromosome}
+ \item{gc250}{gc content in a 250 base window}
+ \item{gc1000}{gc content in a 1000 base window}
+ \item{gcMb}{gc content in a one million base window (not in use)}
+ }
+}
+
+\details{
+gcMb is not in use at the moment.
+}
+
+%\source{
+% \url{http://www.}
+%}
+
+\seealso{
+ The function \code{\link{patchwork.readChroms}} uses this data.
+}
+
+%\examples{
+%}
+
+%\keyword{datasets}
\ No newline at end of file
Added: pkg/patchworkData/man/chrX.mark.Rd
===================================================================
--- pkg/patchworkData/man/chrX.mark.Rd (rev 0)
+++ pkg/patchworkData/man/chrX.mark.Rd 2011-11-30 16:02:48 UTC (rev 34)
@@ -0,0 +1,42 @@
+\name{chrX.mark}
+\alias{chrX.mark}
+\docType{data}
+
+\title{
+GC content data for chromosome X.
+}
+
+\description{
+GC content data for chromosome X.
+Loaded during patchwork.readChroms.
+}
+
+
+\usage{chrX.mark}
+
+\format{
+ A data frame with the following 4 variables.
+ \describe{
+ \item{pos}{position on chromosome}
+ \item{gc250}{gc content in a 250 base window}
+ \item{gc1000}{gc content in a 1000 base window}
+ \item{gcMb}{gc content in a one million base window (not in use)}
+ }
+}
+
+\details{
+gcMb is not in use at the moment.
+}
+
+%\source{
+% \url{http://www.}
+%}
+
+\seealso{
+ The function \code{\link{patchwork.readChroms}} uses this data.
+}
+
+%\examples{
+%}
+
+%\keyword{datasets}
[TRUNCATED]
To get the complete diff run:
svnlook diff /svnroot/patchwork -r 34
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