[NMF-user] [ANN] NMF version 0.9 pre-release - install error - built a Mac binary

[Gordon Robertson]

Renaud,

This looks better, thanks. On OS X 10.7.5, with R 2.15.2, from RStudio:

> dir.create(f <- tempfile())
> install.packages('NMF', repos=c('http://web.cbio.uct.ac.za/~renaud/CRAN', getOption('repos')), lib=f)
trying URL 'http://web.cbio.uct.ac.za/~renaud/CRAN/bin/macosx/leopard/contrib/2.15/NMF_0.9.tgz'
Content type 'application/x-gzip' length 2264651 bytes (2.2 Mb)
opened URL
==================================================
downloaded 2.2 Mb

The downloaded binary packages are in
/var/folders/x5/l6f5m2j91vdd99wy2gchtld40000gn/T//RtmpKCtnnV/downloaded_packages
> unlink(f, recursive=TRUE)
> sessionInfo()
R version 2.15.2 (2012-10-26)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
locale:
[1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8
attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base
loaded via a namespace (and not attached):
[1] tools_2.15.2

G


On 2012-11-13, at 1:20 AM, Renaud Gaujoux wrote:

Ok. This should be fixed now: I had generated empty PACKAGES files in the windows and mac specific directories, obviously not willingly.
Could you please retry when you have time?
Thanks.

Renaud

On 12/11/2012 20:00, Gordon Robertson wrote:
Renaud

I ran the commands, in RStudio, on OS X 10.7.5, on the system with which I built the binary yesterday.

> dir.create(f <- tempfile())
> install.packages('NMF',
+                  repos=c('http://web.cbio.uct.ac.za/~renaud/CRAN'<http://web.cbio.uct.ac.za/%7Erenaud/CRAN%27>, getOption('repos')),
+                  lib=f)

   package ‘NMF’ is available as a source package but not as a binary

Warning in install.packages :
  package ‘NMF’ is not available (for R version 2.15.2)
> unlink(f, recursive=TRUE)

> sessionInfo()
R version 2.15.2 (2012-10-26)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

locale:
[1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

loaded via a namespace (and not attached):
[1] tools_2.15.2

Gordon

On 2012-11-12, at 1:28 AM, Renaud Gaujoux wrote:



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