<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div>Renaud, </div><div><br></div><div>This looks better, thanks. On OS X 10.7.5, with R 2.15.2, from RStudio: </div><div><br></div><div><font class="Apple-style-span" face="Courier">> dir.create(f <- tempfile())</font></div><div><font class="Apple-style-span" face="Courier">> install.packages('NMF', repos=c('<a href="http://web.cbio.uct.ac.za/~renaud/CRAN'">http://web.cbio.uct.ac.za/~renaud/CRAN'</a>, getOption('repos')), lib=f)</font></div><div><font class="Apple-style-span" face="Courier">trying URL '<a href="http://web.cbio.uct.ac.za/~renaud/CRAN/bin/macosx/leopard/contrib/2.15/NMF_0.9.tgz'">http://web.cbio.uct.ac.za/~renaud/CRAN/bin/macosx/leopard/contrib/2.15/NMF_0.9.tgz'</a></font></div><div><font class="Apple-style-span" face="Courier">Content type 'application/x-gzip' length 2264651 bytes (2.2 Mb)</font></div><div><font class="Apple-style-span" face="Courier">opened URL</font></div><div><font class="Apple-style-span" face="Courier">==================================================</font></div><div><font class="Apple-style-span" face="Courier">downloaded 2.2 Mb</font></div><div><font class="Apple-style-span" face="Courier"><br></font></div><div><font class="Apple-style-span" face="Courier">The downloaded binary packages are in</font></div><div><font class="Apple-style-span" face="Courier"><span class="Apple-tab-span" style="white-space:pre"> </span>/var/folders/x5/l6f5m2j91vdd99wy2gchtld40000gn/T//RtmpKCtnnV/downloaded_packages</font></div><div><font class="Apple-style-span" face="Courier">> unlink(f, recursive=TRUE)</font></div><div><font class="Apple-style-span" face="Courier">> sessionInfo()</font></div><div><font class="Apple-style-span" face="Courier">R version 2.15.2 (2012-10-26)</font></div><div><font class="Apple-style-span" face="Courier">Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)</font></div><div><span class="Apple-style-span" style="font-family: Courier; ">locale:</span></div><div><font class="Apple-style-span" face="Courier">[1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8</font></div><div><span class="Apple-style-span" style="font-family: Courier; ">attached base packages:</span></div><div><font class="Apple-style-span" face="Courier">[1] stats graphics grDevices utils datasets methods base </font></div><div><span class="Apple-style-span" style="font-family: Courier; ">loaded via a namespace (and not attached):</span></div><div><font class="Apple-style-span" face="Courier">[1] tools_2.15.2</font></div><div><br></div><div>G</div><div apple-content-edited="true">
<div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><br></div></span></div>
</div>
<br><div><div>On 2012-11-13, at 1:20 AM, Renaud Gaujoux wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">
<meta content="text/html; charset=windows-1252" http-equiv="Content-Type">
<div bgcolor="#FFFFFF" text="#000000">
<div class="moz-cite-prefix">Ok. This should be fixed now: I had
generated empty PACKAGES files in the windows and mac specific
directories, obviously not willingly.<br>
Could you please retry when you have time?<br>
Thanks.<br>
<br>
Renaud<br>
<br>
On 12/11/2012 20:00, Gordon Robertson wrote:<br>
</div>
<blockquote cite="mid:8EA2E8EA-A5C8-4A9D-A44A-451323095037@bcgsc.ca" type="cite">
<div><span class="Apple-style-span" style="orphans: 2; text-align:
-webkit-auto; text-indent: 0px; widows: 2;
-webkit-text-decorations-in-effect: none; "><span class="Apple-style-span" style="orphans: 2; text-align:
-webkit-auto; text-indent: 0px; widows: 2;
-webkit-text-decorations-in-effect: none; ">
<div style="word-wrap: break-word; -webkit-nbsp-mode: space;
-webkit-line-break: after-white-space; "><span class="Apple-style-span" style="orphans: 2; text-align:
-webkit-auto; text-indent: 0px; widows: 2;
-webkit-text-decorations-in-effect: none; ">
<div style="border-collapse: separate; color: rgb(0, 0,
0); font-family: Helvetica; font-style: normal;
font-variant: normal; font-weight: normal;
letter-spacing: normal; line-height: normal;
text-transform: none; white-space: normal;
word-spacing: 0px; -webkit-border-horizontal-spacing:
0px; -webkit-border-vertical-spacing: 0px;
-webkit-text-size-adjust: auto;
-webkit-text-stroke-width: 0px; font-size: medium;
word-wrap: break-word; -webkit-nbsp-mode: space;
-webkit-line-break: after-white-space; ">Renaud</div>
<div style="border-collapse: separate; color: rgb(0, 0,
0); font-family: Helvetica; font-style: normal;
font-variant: normal; font-weight: normal;
letter-spacing: normal; line-height: normal;
text-transform: none; white-space: normal;
word-spacing: 0px; -webkit-border-horizontal-spacing:
0px; -webkit-border-vertical-spacing: 0px;
-webkit-text-size-adjust: auto;
-webkit-text-stroke-width: 0px; font-size: medium;
word-wrap: break-word; -webkit-nbsp-mode: space;
-webkit-line-break: after-white-space; "><br>
</div>
<div style="border-collapse: separate; color: rgb(0, 0,
0); font-family: Helvetica; font-style: normal;
font-variant: normal; font-weight: normal;
letter-spacing: normal; line-height: normal;
text-transform: none; white-space: normal;
word-spacing: 0px; -webkit-border-horizontal-spacing:
0px; -webkit-border-vertical-spacing: 0px;
-webkit-text-size-adjust: auto;
-webkit-text-stroke-width: 0px; font-size: medium;
word-wrap: break-word; -webkit-nbsp-mode: space;
-webkit-line-break: after-white-space; ">I ran the
commands, in RStudio, on OS X 10.7.5, on the system
with which I built the binary yesterday. </div>
<div style="border-collapse: separate; color: rgb(0, 0,
0); font-family: Helvetica; font-style: normal;
font-variant: normal; font-weight: normal;
letter-spacing: normal; line-height: normal;
text-transform: none; white-space: normal;
word-spacing: 0px; -webkit-border-horizontal-spacing:
0px; -webkit-border-vertical-spacing: 0px;
-webkit-text-size-adjust: auto;
-webkit-text-stroke-width: 0px; font-size: medium;
word-wrap: break-word; -webkit-nbsp-mode: space;
-webkit-line-break: after-white-space; "><br>
</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; ">
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; ">>
dir.create(f <- tempfile())</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; ">>
install.packages('NMF', </div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; ">+
repos=c('<a moz-do-not-send="true" href="http://web.cbio.uct.ac.za/%7Erenaud/CRAN%27">http://web.cbio.uct.ac.za/~renaud/CRAN'</a>,
getOption('repos')), </div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; ">+
lib=f)</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; "><br>
</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; ">
package ‘NMF’ is available as a source package but
not as a binary</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; "><br>
</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; ">Warning
in install.packages :</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; ">
package ‘NMF’ is not available (for R version
2.15.2)</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; ">>
unlink(f, recursive=TRUE)</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; "><br>
</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; ">>
sessionInfo()</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; ">R
version 2.15.2 (2012-10-26)</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; ">Platform:
x86_64-apple-darwin9.8.0/x86_64 (64-bit)</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; "><br>
</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; ">locale:</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; ">[1]
en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; "><br>
</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; ">attached
base packages:</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; ">[1]
stats graphics grDevices utils datasets
methods base </div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; "><br>
</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; ">loaded
via a namespace (and not attached):</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; ">[1]
tools_2.15.2</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; "><br>
</div>
<div style="word-wrap: break-word; -webkit-nbsp-mode:
space; -webkit-line-break: after-white-space; ">Gordon</div>
</div>
</span></div>
</span></span>
</div>
<br>
<div>
<div>On 2012-11-12, at 1:28 AM, Renaud Gaujoux wrote:</div>
<br>
</div>
</blockquote>
<br>
</div>
</blockquote></div><br></body></html>