[Ipmpack-users] Fwd: IPMpack-users Digest, Vol 13, Issue 2
"Iván Alejandro Ortiz R."
iortiz at cieco.unam.mx
Fri Oct 17 08:10:50 CEST 2014
Hi all,
Thanks Dr. Bruna and Sean by your answers about the CI of lambda. I did this using the objects of IPMpack: sampleVitalRateObj, sampleIPM and sampleIPMOutput.
Best wishes,
Iván
Iván Alejandro Ortiz Rodríguez
Posgrado en Ciencias Biológicas,
Lab. de Ecología de Poblaciones y Comunidades Tropicales
Centro de Investigaciones en Ecosistemas, UNAM-Campus Morelia
Página web: http://www.oikos.unam.mx/LECT/index.php/miembros/9-perfiles/36-ivan
Inicio del mensaje reenviado:
> De: ipmpack-users-request at lists.r-forge.r-project.org
> Asunto: IPMpack-users Digest, Vol 13, Issue 2
> Fecha: 8 de octubre de 2014 18:59:28 GMT-5
> Para: ipmpack-users at lists.r-forge.r-project.org
> Responder a: ipmpack-users at lists.r-forge.r-project.org
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> Today's Topics:
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> 1. Re: IPMpack-users Digest, Vol 13, Issue 1 (Bruna, Emilio M.)
> 2. Re: IPMpack-users Digest, Vol 13, Issue 1 (Sean McMahon)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Wed, 8 Oct 2014 23:40:07 +0000
> From: "Bruna, Emilio M." <embruna at ufl.edu>
> To: "ipmpack-users at r-forge.wu-wien.ac.at"
> <ipmpack-users at r-forge.wu-wien.ac.at>
> Subject: Re: [Ipmpack-users] IPMpack-users Digest, Vol 13, Issue 1
> Message-ID: <D05AA530.2F0E6%embruna at ufl.edu>
> Content-Type: text/plain; charset="windows-1252"
>
> Hi Ivan et al, I created 1000 populations using bootstrapping of the original individual-based data, and then used IPM pack as a function to calculate lambda of each one of these populations. I then used selected the values for upper and lower 95% CI?s using the procedure for bias-corrected confidence intervals In Caswell?s second edition.
>
> If you need additional help, let me know via email and I can point you in the direction of the code, which will soon be on Github for all to use.
>
> EB
> _____________________________________________________
>
> Emilio M. Bruna | University of Florida
> Distinguished Teaching Scholar | Professor of Tropical Ecology & Latin American Studies
> Director, Florida-Brazil Linkage Institute <http://www.floridabrazil.org/> | Editor-in-Chief, Biotropica<http://www.biotropica.org/>
> Phone: (352) 846-0634 Fax: (352) 392-6984 web: www.BrunaLab.org<http://www.brunalab.org/> twitter: @BrunaLab
>
>
> From: "ipmpack-users-request at r-forge.wu-wien.ac.at<mailto:ipmpack-users-request at r-forge.wu-wien.ac.at>" <ipmpack-users-request at r-forge.wu-wien.ac.at<mailto:ipmpack-users-request at r-forge.wu-wien.ac.at>>
> Reply-To: "ipmpack-users at r-forge.wu-wien.ac.at<mailto:ipmpack-users at r-forge.wu-wien.ac.at>" <ipmpack-users at r-forge.wu-wien.ac.at<mailto:ipmpack-users at r-forge.wu-wien.ac.at>>
> Date: Wednesday, October 8, 2014 at 6:00 AM
> To: "ipmpack-users at r-forge.wu-wien.ac.at<mailto:ipmpack-users at r-forge.wu-wien.ac.at>" <ipmpack-users at r-forge.wu-wien.ac.at<mailto:ipmpack-users at r-forge.wu-wien.ac.at>>
> Subject: IPMpack-users Digest, Vol 13, Issue 1
>
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> Today's Topics:
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> 1. CI of ? using IPMpack? (Iv?n Alejandro Ortiz R.)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Wed, 8 Oct 2014 00:32:05 -0500
> From: "Iv?n Alejandro Ortiz R." <iortiz at cieco.unam.mx<mailto:iortiz at cieco.unam.mx>>
> To: ipmpack-users at lists.r-forge.r-project.org<mailto:ipmpack-users at lists.r-forge.r-project.org>
> Subject: [Ipmpack-users] CI of ? using IPMpack?
> Message-ID: <2E9F889A-9407-4081-A933-24871F9E6838 at cieco.unam.mx<mailto:2E9F889A-9407-4081-A933-24871F9E6838 at cieco.unam.mx>>
> Content-Type: text/plain; charset="utf-8"
>
> Hi everybody!
>
>
>
> I hope you're Ok. Someone knows if is possible estimate the confidence intervals of ? using IPMpack?
>
>
> Best wishes,
>
>
> Iv?n
>
>
> Iv?n Alejandro Ortiz Rodr?guez
> Posgrado en Ciencias Biol?gicas,
> Lab. de Ecolog?a de Poblaciones y Comunidades Tropicales
> Centro de Investigaciones en Ecosistemas, UNAM-Campus Morelia
>
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> Message: 2
> Date: Wed, 8 Oct 2014 19:59:18 -0400
> From: Sean McMahon <sean.mcmahon73 at gmail.com>
> To: "Bruna, Emilio M." <embruna at ufl.edu>
> Cc: Sean McMahon <ipmpack at gmail.com>,
> "ipmpack-users at r-forge.wu-wien.ac.at"
> <ipmpack-users at r-forge.wu-wien.ac.at>
> Subject: Re: [Ipmpack-users] IPMpack-users Digest, Vol 13, Issue 1
> Message-ID: <08185BD3-B166-45CE-ACE6-25E1FB01C000 at gmail.com>
> Content-Type: text/plain; charset="windows-1252"
>
> Hi all,
>
> There is also a function called ?sampleIPM()? in the package that is designed to reproduce IPMs from a list of vital rate objects. These would be developed by sampleVitalRateObj and other functions found through the help files. Please let us know if this is what you hoped to achieve. I believe our sample? functions can help with this.
>
> Best,
>
> Sean
>
> IPMpackTeam
>
>
>
> On Oct 8, 2014, at 7:40 PM, Bruna, Emilio M. <embruna at ufl.edu> wrote:
>
>> Hi Ivan et al, I created 1000 populations using bootstrapping of the original individual-based data, and then used IPM pack as a function to calculate lambda of each one of these populations. I then used selected the values for upper and lower 95% CI?s using the procedure for bias-corrected confidence intervals In Caswell?s second edition.
>>
>> If you need additional help, let me know via email and I can point you in the direction of the code, which will soon be on Github for all to use.
>>
>> EB
>> _____________________________________________________
>>
>> Emilio M. Bruna | University of Florida
>> Distinguished Teaching Scholar | Professor of Tropical Ecology & Latin American Studies
>> Director, Florida-Brazil Linkage Institute | Editor-in-Chief, Biotropica
>> Phone: (352) 846-0634 Fax: (352) 392-6984 web: www.BrunaLab.org twitter: @BrunaLab
>>
>>
>> From: "ipmpack-users-request at r-forge.wu-wien.ac.at" <ipmpack-users-request at r-forge.wu-wien.ac.at>
>> Reply-To: "ipmpack-users at r-forge.wu-wien.ac.at" <ipmpack-users at r-forge.wu-wien.ac.at>
>> Date: Wednesday, October 8, 2014 at 6:00 AM
>> To: "ipmpack-users at r-forge.wu-wien.ac.at" <ipmpack-users at r-forge.wu-wien.ac.at>
>> Subject: IPMpack-users Digest, Vol 13, Issue 1
>>
>> Send IPMpack-users mailing list submissions to
>> ipmpack-users at lists.r-forge.r-project.org
>>
>> To subscribe or unsubscribe via the World Wide Web, visit
>> http://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/ipmpack-users
>>
>> or, via email, send a message with subject or body 'help' to
>> ipmpack-users-request at lists.r-forge.r-project.org
>>
>> You can reach the person managing the list at
>> ipmpack-users-owner at lists.r-forge.r-project.org
>>
>> When replying, please edit your Subject line so it is more specific
>> than "Re: Contents of IPMpack-users digest..."
>>
>>
>> Today's Topics:
>>
>> 1. CI of ? using IPMpack? (Iv?n Alejandro Ortiz R.)
>>
>>
>> ----------------------------------------------------------------------
>>
>> Message: 1
>> Date: Wed, 8 Oct 2014 00:32:05 -0500
>> From: "Iv?n Alejandro Ortiz R." <iortiz at cieco.unam.mx>
>> To: ipmpack-users at lists.r-forge.r-project.org
>> Subject: [Ipmpack-users] CI of ? using IPMpack?
>> Message-ID: <2E9F889A-9407-4081-A933-24871F9E6838 at cieco.unam.mx>
>> Content-Type: text/plain; charset="utf-8"
>>
>> Hi everybody!
>>
>>
>>
>> I hope you're Ok. Someone knows if is possible estimate the confidence intervals of ? using IPMpack?
>>
>>
>> Best wishes,
>>
>>
>> Iv?n
>>
>>
>> Iv?n Alejandro Ortiz Rodr?guez
>> Posgrado en Ciencias Biol?gicas,
>> Lab. de Ecolog?a de Poblaciones y Comunidades Tropicales
>> Centro de Investigaciones en Ecosistemas, UNAM-Campus Morelia
>>
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>>
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