[GenABEL-dev] Error wil testing ProbABEL 0.4.2

[L.C. Karssen]

Hi Jean,

On 03-03-14 18:34, Jean Mao wrote:
> Hi  Lennart,
> 
> Thank you very much for your reply. Please see attached log files. I
> think 3.0.2 is the version of R I used.

Thanks for the information. Can you verify whether you have the R
package 'survival' installed or not?

In case you're not familiar with R, here are the steps:
- Start R from the Linux command line by typing:
 R
- At the R prompt, type:
 library("survival")

If these steps produce no warnings or errors, you have the package
installed.

- Exit R by typing:
 q()


Thanks,

Lennart.

> 
> Jean
> 
> On 3/3/2014 3:52 AM, L.C. Karssen wrote:
>> Dear Jean,
>>
>> Thank you for you interest in ProbABEL. From the output you sent us, it
>> seems that one of the checks fails in which the output of various
>> regressions in R are compared to ProbABEL output. (The XFAIL part is an
>> expected failure, so only the check for pacoxph fails).
>>
>> In order to further diagnose the problem, we need some more information.
>> Which Linux distribution are you using? Which version of R is installed
>> on your machine?
>>
>> Could you sent us the config.log file that was created when you ran
>> ./configure?
>>
>>
>> One last thing that comes to mind: ./configure tests for the existence
>> of R, but it doesn't check whether you have the 'survival' R package
>> installed. I guess that is the problem here.
>>
>>
>> Best,
>>
>> Lennart.
>>
>> On 28-02-14 19:51, Jean Mao wrote:
>>> Hi,
>>>
>>> Thank you very much for providing this software to scientific community.
>>> We have installed it in our cluster for NIH scientists.
>>>
>>> Recently, while trying to update to 0.4.2 version, I ran into error
>>> message when testing the installation. Attached is the log file. Any
>>> help will be appreciated. Thank you.
>>>
>>> Jean Mao
>>> Helix Staff
>>> CIT, NIH
>>>
>>>
>>> _______________________________________________
>>> genabel-devel mailing list
>>> genabel-devel at lists.r-forge.r-project.org
>>> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/genabel-devel
>>>
>>>
> 

-- 
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L.C. Karssen
Utrecht
The Netherlands

lennart at karssen.org
http://blog.karssen.org
GPG key ID: A88F554A
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