[GenABEL-dev] make check 2 PASS 4 FAIL

[Latchezar (Lucho) Dimitrov]

Dear genABEL developers,

I have successfully built probABEL v.0.4.2 using gcc-4.1.1 on ORACLE Solaris 10 x86 but when I ran

  make check

I got the subj. results. I went and manually ran one of the failing check:

run_diff coxph_dose_add.out.txt coxph_prob_add.out.txt \
     "pacoxph check: dose vs. prob" -I SNP
diff: two filename arguments required
pacoxph check: dose vs. prob                                           FAILED

Then I manually compared the two fails:

diff coxph_dose_add.out.txt coxph_prob_add.out.txt 
1c1
< name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_SNP_add sebeta_SNP_add chi2_SNP
---
> name A1 A2 Freq1 MAF Quality Rsq n Mean_predictor_allele chrom position beta_SNP_addA1 sebeta_SNP_addA1 chi2_SNP_A1

Finally, I compared the two files w/o their first lines and they are the same.


Any help highly appreciated. Please find the log file attached


Thank you very much,
Latchezar (Lucho) "Speaking w/ computers" Dimitrov

Analyst/Programmer IV,
Center for Genomics and Personalized Medicine Research
Wake Forest University School of Medicine      fax:  (336)713-7566
Medical Center Blvd.                           work: (336)713-7137
Winston-Salem, NC 27157                        

-- A computer lets you make more mistakes faster than any invention in human history --
   with the possible exceptions of handguns and tequila.
                                           --Mitch Ratliffe, "Technology Review" 


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