[GenABEL-dev] impute2databel FLOAT

[Frank, Alvaro Jesus]

Hi All,

I am in the process of finishing the first USER usable version of omicabelnomm and would need help converting real data from impute2 to databel.

The function impute2databel seems ok but I have no idea if it stores in FLOAT or DOUBLE the values.

I found this on the mailing list, would it work?


> owd<- setwd(pth)
> fls<- list.files(pattern="^chr")
> ufls<- unique(sapply(strsplit(fls, "_"), "[", 1))
> for(i in ufls){
>       of<- strsplit(i, "\\.")[[1]]
>       of<- paste(of[1], tail(of, 1), sep=".")
>       impute2databel(genofile = i,
>                      samplefile = paste(i, "info", sep="_"),
>                      outfile = of,
>                      makeprob=TRUE, old=FALSE)
> }
> setwd(owd)

Best,

Alvaro

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