[GenABEL-dev] MixABEL compilation

[L.C. Karssen]

Thanks Nicola and Maarten,

I'm currently sitting in the same room with Yakov :-). We managed to get
MixABEL installed by downloading the CRAN version and adding the
-fpermissive GCC option to the Makevars file and rebuild the package.
As you may have noticed, I also committed several fixes to MixABEL
trunk, but R CMD check doesn't finish without errors yet...


Lennart.

On 11-08-14 09:29, Nicola Pirastu wrote:
> Hi,
> 
> I have a working version which I got from Yakov, which we are still using, We have been using it on the latest R so it should compile anywhere. 
> I think that the error Maarten gets is still the one linked to the check version of DatABEL.
> I can send it to you if you like.
> 
> Best.
> 
> Nicola
> 
> 
> Il giorno 10/ago/2014, alle ore 21:33, Maarten Kooyman <kooyman at gmail.com> ha scritto:
> 
>> Hi Lennart,
>>
>> I did install MixABEL from the file MixABEL_0.1-2.tar.gz under R 2.15. I think I got it from Nicola, but I can't recall exactly.
>>
>> I tried to install the file under R 3.1.0 (R CMD INSTALL MixABEL_0.1-2.tar.gz ) and it failed (after same compiler warning) with:
>>
>> installing to /home/mkooyman/R/x86_64-pc-linux-gnu-library/3.1/MixABEL/libs
>> ** R
>> ** inst
>> ** preparing package for lazy loading
>> Error : .onAttach failed in attachNamespace() for 'DatABEL', details:
>>  call: if (pkgVersion != cranVersion) {
>>  error: argument is of length zero
>> Error : package ‘DatABEL’ could not be loaded
>> ERROR: lazy loading failed for package ‘MixABEL’
>> * removing ‘/home/mkooyman/R/x86_64-pc-linux-gnu-library/3.1/MixABEL’
>>
>> Kind regards,
>>
>> Maarten
>>
>>
>> On 10-08-14 17:11, L.C. Karssen wrote:
>>> Hi Maarten,
>>>
>>> I seem to remember that you compiled MixABEL a couple of months ago. Did
>>> you use the version on CRAN or the one from SVN?
>>>
>>> We tried to install the CRAN version today and it failed with a GCC
>>> error (we needed to add -fpermissive to src/Makevars to fix it), but
>>> building from SVN currently fails miserably (I presume because of the
>>> stricter CRAN checks).
>>> How did you handle this?
>>>
>>>
>>> Best,
>>>
>>> Lennart.
>>
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>> genabel-devel at lists.r-forge.r-project.org
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> 

-- 
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L.C. Karssen
Utrecht
The Netherlands

lennart at karssen.org
http://blog.karssen.org
GPG key ID: A88F554A
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