[GenABEL-dev] GenABEL: Installation/load error on Unix, MAC and Windows...

[Yurii Aulchenko]

Now on Austrian mirror, 1.7-3 is available for all platforms.

Yurii


On Thu, Jan 10, 2013 at 4:58 PM, Maria G <mgmaria at yandex.ru> wrote:

> The method which Nicola suggested (and published on Forum) worked for me!
> :)
>
> best
>
> Maria
>
> 10.01.2013, 19:47, "L.C. Karssen" <lennart at karssen.org>:
> > Dear Maria,
> >
> > On 01/10/2013 04:41 PM, Maria G wrote:
> >
> >>  Dear Lennart,
> >>
> >>  I don't see 1.7-3 version for MAC (which I use) here:
> >>  http://cran.at.r-project.org/web/packages/GenABEL/index.html
> >
> > You're right... That's strange.
> > Yurii, you have a Mac, do you know why it is lagging on Macs?
> >
> > Best,
> >
> > Lennart.
> >
> >>  best
> >>  Maria
> >>
> >>  10.01.2013, 19:37, "L.C. Karssen" <lennart at karssen.org>:
> >>>  Dear both,
> >>>
> >>>  Yesterday evening Yurii uploaded GenABEL v1.7-3 to CRAN. I installed
> it
> >>>  on our servers this morning but be careful with your choice of
> download
> >>>  mirror. I used the Dutch one at first, but that one still had the
> older
> >>>  version. The US mirror had the latest version.
> >>>
> >>>  Lennart.
> >>>
> >>>  On 01/10/2013 04:08 PM, Maria G wrote:
> >>>>   Thanks a lot, Nicola!!
> >>>>
> >>>>   Don't you mind if I copy your answer to the Forum?
> >>>>   or may be you would like to publish the answer there from your
> personal name?
> >>>>
> >>>>   best
> >>>>   Maria
> >>>>
> >>>>   10.01.2013, 19:06, "Nicola Pirastu" <pirastu at burlo.trieste.it>:
> >>>>>   Hi Maria,
> >>>>>
> >>>>>   the problem was addressed a few days ago and I think it will be
> fixed permanently in the next release.
> >>>>>
> >>>>>   Meanwhile it is possible to go around it by adding a few lines in
> the file /GenABEL/R/checkPackageVersionOnCRAN.R
> >>>>>
> >>>>>   this is how it looks like now:
> >>>>>
> >>>>>           stringSplit <- strsplit(targetLine,splitPattern)
> >>>>>           cranVersion <- stringSplit[[1]][length(stringSplit[[1]])-1]
> >>>>>
> >>>>>   and this is the how I personally fixed it:
> >>>>>
> >>>>>        stringSplit <- strsplit(targetLine,splitPattern)
> >>>>>
> >>>>>         if(length(stringSplit)>0){
> >>>>>
> >>>>>           cranVersion <- stringSplit[[1]][length(stringSplit[[1]])-1]
> >>>>>
> >>>>>           }else{
> >>>>>                   cranVersion <- "1.7-2"
> >>>>>         }
> >>>>>
> >>>>>   Basically for some reason it does not catch the version number
> from CRAN which was not supposed to happen, so I just added a check.
> >>>>>
> >>>>>   What you have to do is:
> >>>>>
> >>>>>   1) uncompress the GenABEL tar
> >>>>>
> >>>>>   2) open the /GenABEL/R/checkPackageVersionOnCRAN.R file
> >>>>>
> >>>>>   3) add the two lines
> >>>>>
> >>>>>   4) save and reinstall the GenABEL package.
> >>>>>
> >>>>>   This worked at least for me. I'm sure someone figured out
> something more elegant, but this is an easy work around.
> >>>>>
> >>>>>   Hope it helps.
> >>>>>
> >>>>>   Nicola
> >>>>>
> >>>>>   Il giorno 10/gen/2013, alle ore 15:56, Maria G <mgmaria at yandex.ru>
> ha scritto:
> >>>>>>    Dear maintainers,
> >>>>>>
> >>>>>>    I would like to attract your attention to recently arised
> problem with loading GenABEL under any version of OS.
> >>>>>>
> >>>>>>    Please, have a look at the Forum here:
> >>>>>>
> >>>>>>    http://forum.genabel.org/viewtopic.php?f=6&t=733&p=1332#p1332
> >>>>>>
> >>>>>>    Hope to get good news from you soon
> >>>>>>
> >>>>>>    best
> >>>>>>
> >>>>>>    Maria
> >>>>>>
> >>>>>>    _______________________________________________
> >>>>>>    genabel-devel mailing list
> >>>>>>    genabel-devel at lists.r-forge.r-project.org
> >>>>>>
> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/genabel-devel
> >>>  --
> >>>  -----------------------------------------------------------------
> >>>  L.C. Karssen
> >>>  Utrecht
> >>>  The Netherlands
> >>>
> >>>  lennart at karssen.org
> >>>  http://blog.karssen.org
> >>>
> >>>  Stuur mij aub geen Word of Powerpoint bestanden!
> >>>  Zie http://www.gnu.org/philosophy/no-word-attachments.nl.html
> >>>  ------------------------------------------------------------------
> >
> > --
> > -----------------------------------------------------------------
> > L.C. Karssen
> > Utrecht
> > The Netherlands
> >
> > lennart at karssen.org
> > http://blog.karssen.org
> >
> > Stuur mij aub geen Word of Powerpoint bestanden!
> > Zie http://www.gnu.org/philosophy/no-word-attachments.nl.html
> > ------------------------------------------------------------------
>



-- 
-----------------------------------------------------
Yurii S. Aulchenko

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