[GenABEL-dev] reading data

Yurii Aulchenko yurii.aulchenko at gmail.com
Wed Sep 12 16:46:02 CEST 2012


Dear Silvano,

This question is something for our forum, http://forum.genabel.org; please
ask your question there.

This list is not intended for user support, but rather for discussion of
the project as a whole and the GenABEL suite development questions (bugs,
code, new features, methods).

Probably we need to make this more clear in the documentation to our
packages.

Best wishes,
Yurii
-- 
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Yurii S. Aulchenko
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On Wed, Sep 12, 2012 at 2:52 PM, Silvano Cesar da Costa <silvano at uel.br>wrote:

> Hi,
>
> I am new in GenABEL and I am having problems in the data reading.
>
> I used the plink to transform ped and map files in tped and tfam without
> problems.
>
> When I use:
>
> dados = load.gwaa.data(phe='~/data/baepphe.txt', gen='~/data/baep.raw',
> force=T)
>
> the output is:
>
> Error in load.gwaa.data(phe =
> "/home6/alepereira/Silvano/baependi_fenot.txt",  :
>   the filed named "id", containing the identifier presented in both pheno-
> and geno- files was not found in the phenofile
>
> I tried change ID but isn't work.
>
> Some idea?
>
> Thanks,
>
> ---------------------------------------------
> Silvano Cesar da Costa
>
> Universidade Estadual de Londrina
> Centro de Ciências Exatas
> Departamento de Estatística
>
> Fone: (43) 3371-4346
> ---------------------------------------------
>
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>
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