[GenABEL-dev] reading data

Silvano Cesar da Costa silvano at uel.br
Wed Sep 12 14:52:52 CEST 2012


Hi,

I am new in GenABEL and I am having problems in the data reading.

I used the plink to transform ped and map files in tped and tfam without
problems.

When I use:

dados = load.gwaa.data(phe='~/data/baepphe.txt', gen='~/data/baep.raw',
force=T)

the output is:

Error in load.gwaa.data(phe =
"/home6/alepereira/Silvano/baependi_fenot.txt",  :
  the filed named "id", containing the identifier presented in both pheno-
and geno- files was not found in the phenofile

I tried change ID but isn't work.

Some idea?

Thanks,

---------------------------------------------
Silvano Cesar da Costa

Universidade Estadual de Londrina
Centro de Ciências Exatas
Departamento de Estatística

Fone: (43) 3371-4346
---------------------------------------------



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