[GenABEL-dev] new topic for Journal Club

[Yurii Aulchenko]

Suman,

would you post a small reading list as an answer to that post, @ forum
> journal club

http://forum.genabel.org/viewtopic.php?f=9&t=477

? -- a good opportunity to advertize yours and Cecile's excellent works!

best wishes,
Yurii

2011/5/23 Maria G <mgmaria at yandex.ru>:
> Hi dear all,
> I've approved the topic :)
> Let's see, what happens..
>
> best
> Mascha
>
> 23.05.2011, 13:23, "L.C. Karssen" <l.karssen at erasmusmc.nl>:
>> On Mon, 2011-05-23 at 10:42 +0400, Maria G wrote:
>>
>>>  Hi Yurii,
>>>
>>>  so what will we do with "Methodology for prediction equations of
>>>  phenotypic data" ? I
>>>  Will you open a new "The methodology forum"? If yes, and it needs
>>>  time , I would suggest to write to Nicolas Guillemin explaining the
>>>  delay with approval of her topic.. Just not to lose her trust
>>
>> I agree on that. We shouldn't let people wait without informing them of
>> the reason. Even if a decision cannot be taken yet, we still should
>> inform Nicolas about the delay and the (expected) process. Otherwise, as
>> Mascha says, people will lose interest and/or become disappointed.
>>
>> Regards,
>>
>> Lennart
>>
>>>  best
>>>
>>>  Mascha
>>>
>>>  21.05.2011, 17:08, "Maria G" <mgmaria at yandex.ru>;:
>>>>  Hi :)
>>>>
>>>>  That's great, that more people become active :)
>>>>
>>>>  Do you mean the topic "Methodology for prediction equations of phenotypic data"?
>>>>  Actually, it was my idea ;) I've asked Nicolas Guillemin if she would like to open a new topic for open discussion
>>>>  It looks like she liked that idea ;)
>>>>
>>>>  And you right, it's a good time to start  "the methodology forum"
>>>>  The only thing, now I'm not sure, if it should be a separate forum, or just the "broadening" of the On-line Journal Club (as we disscused beforehand - to collect all topics under the one name "Journal Club", and later on to separate them into different topics, if necessary).
>>>>  If your idea is to start  a NEW "The methodology forum" in parallel with the NEW  1.6-7 release, than it would be reasonable to specify the difference between Journal Club and the Methodology forum
>>>>
>>>>  best
>>>>
>>>>  Mascha
>>>>
>>>>  21.05.2011, 16:28, "Yurii Aulchenko" <yurii.aulchenko at gmail.com>;;:
>>>>>   Mascha,
>>>>>
>>>>>   Not sure you ahve seen this yet -- unapproved topic
>>>>>
>>>>>   http://forum.genabel.org/viewtopic.php?f=9&t=477
>>>>>
>>>>>   We have 1.6-7 released, and it will be advertised within soon. Good
>>>>>   time to advertise the methodology forum as well?
>>>>>
>>>>>   bw,
>>>>>   Yurii
>>>>>
>>>>>  >  On Thu, May 19, 2011 at 1:21 PM, Yurii Aulchenko
>>>>>   <yurii.aulchenko at gmail.com>;;; wrote:
>>>>>>    Hi Maria,
>>>>>>
>>>>>>    I am not sure (yet) if this will develop into really methodological or
>>>>>>    pure software-like discussion, in that I may think of follwoing this
>>>>>>    up a bit before making the move. But this is really up to you.
>>>>>>>
>>>>>>    Suman, you are probably the one who is in the best position to give
>>>>>>    few references (GRIPS, PredictABEL, and few refs from Cecile) for this
>>>>>>    person to start with.
>>>>>>
>>>>>>    Yurii
>>>>>>
>>>>>>    On Thu, May 19, 2011 at 9:20 AM, Maria G <mgmaria at yandex.ru>;;; wrote:
>>>>>>>    Hi everybody,
>>>>>>>
>>>>>>>    I would suggest to move the following topic (pls. see the link and text below) from the "Forum" to the "Journal Club" for better discussion.
>>>>>>>    The title could be something like "Methodology for prediction equations of phenotypic data, based on SNP"
>>>>>>>
>>>>>>>    What would you say?
>>>>>>>
>>>>>>>    best
>>>>>>>    Mascha
>>>>>>>
>>>>>>>    ############################################
>>>>>>>
>>>>>>>    http://forum.genabel.org/viewtopic.php?f=6&t=475
>>>>>>>
>>>>>>>    Hi
>>>>>>>    I'm working on a methodology for developing prediction equations of phenotypic data, based on SNPs, calculated with the lm function.
>>>>>>>    I saw that it's possible in the GenABEL tutorial.
>>>>>>>
>>>>>>>    I'm wondering if someone has experience in this domain, or if there is some interresting bibliography on it (I don't find publications with GenABEL on prediction model for phenotype based on SNPs) ? My interest is to demonstrate that this type of methodology, using lm and GenABEL, could be reliable for the project.
>>>>>>>
>>>>>>>    Thanks
>>>>>>>    ############################################
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>> --
>> -----------------------------------------------
>> L.C. Karssen
>> Erasmus MC
>> Department of Epidemiology
>> Room Ee 2224
>>
>> Postbus 2040
>> 3000 CA Rotterdam
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>>
>> phone: +31-10-7044217
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>> -----------------------------------------------
>