[Genabel-commits] r1253 - tutorials/OmicABEL

[noreply at r-forge.r-project.org]

Author: yurii
Date: 2013-06-29 12:45:59 +0200 (Sat, 29 Jun 2013)
New Revision: 1253

Modified:
   tutorials/OmicABEL/exampleOfUse.org
Log:
DOUBLE message extension

Modified: tutorials/OmicABEL/exampleOfUse.org
===================================================================
--- tutorials/OmicABEL/exampleOfUse.org	2013-06-29 10:25:48 UTC (rev 1252)
+++ tutorials/OmicABEL/exampleOfUse.org	2013-06-29 10:45:59 UTC (rev 1253)
@@ -188,14 +188,19 @@
 : Ncells  364098 19.5     667722  35.7   467875  25.0
 : Vcells 3105774 23.7   17089802 130.4 20039530 152.9
 
-Note that in real life you are most likley to use one of the 
-GenABEL conversion procedures to convert your data from IMPUTE, 
+*IMPORTANT* Note that in real life you are most likley to use one 
+of the GenABEL conversion procedures to convert your data from IMPUTE, 
 MACH, or MiniMac to DatABEL/filevector. The functions are 
-impute2databel, mach2databel, and minimac2databel. {\bf 
-Make sure you use the 'dataOutType = "DOUBLE"' argument when 
-doing conversion! - OmicABEL currently accepts only DOUBLE format 
-for all inputs}
+impute2databel, mach2databel, and minimac2databel. 
 
+Make sure you use the dataOutType = "DOUBLE"  
+argument when doing genotype data conversion! - OmicABEL currently 
+accepts only DOUBLE format for all inputs.
+
+If you have already converted the data using the "FLOAT" type, you 
+will need to convert that to "DOUBLE" (send us an email, we are planning  
+to write a simple float2double converter).
+
 ** Export the data in format for FaST-LMM
 We are going to compare the OmicABEL results with FaST-LMM, and
 therefore will export the results in a format usable for FaST-LMM as