[Genabel-commits] r686 - pkg/webpages
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Mon Mar 7 23:52:34 CET 2011
Author: yurii
Date: 2011-03-07 23:52:34 +0100 (Mon, 07 Mar 2011)
New Revision: 686
Added:
pkg/webpages/pkgDatABEL.html
pkg/webpages/pkgGenABEL.html
pkg/webpages/pkgMetABEL.html
pkg/webpages/pkgMixABEL.html
pkg/webpages/pkgProbABEL.html
Modified:
pkg/webpages/packages.html
pkg/webpages/pkgParallABEL.html
pkg/webpages/pkgPredictABEL.html
Log:
changing 'packages' structure
Modified: pkg/webpages/packages.html
===================================================================
--- pkg/webpages/packages.html 2011-03-07 22:33:30 UTC (rev 685)
+++ pkg/webpages/packages.html 2011-03-07 22:52:34 UTC (rev 686)
@@ -18,89 +18,43 @@
<a href="http://r-forge.r-project.org/projects/genabel/" target="_blank">GenABEL on R-forge</a>
</p>
<p>
-For stable releases, use CRAN version for R packages or links provided at this page
+For stable releases, use CRAN version for R packages or links provided at this web-site
</p>
<a name="GenABEL"></a>
-<h3>GenABEL</h3>
+<h3><a href="/drupal6/?q=packages/GenABEL">GenABEL</a></h3>
Genome-wide association analysis for quantitative, binary and time-till-event traits
-<ul>
-<li><em>Status:</em> Stable</li>
-<li><em>Install:</em> start R, then type install.packages("GenABEL")</li>
-<li><em>Quick start:</em> start R, then type library(GenABEL); demo(ge03d2)</li>
-<li><em>Tutorial:</em> see "ABEL tutorial", starting from section "Introduction to GenABEL"</li>
-<li><em>Manual:</em>
-[ <a href="http://cran.at.r-project.org/web/packages/GenABEL/GenABEL.pdf">PDF</a> |
-<a href="http://test.genabel.org/old/htmlGenA/00Index.html">HTML</a>]</li>
-<li><em>Reference:</em>
-<a href="http://www.ncbi.nlm.nih.gov/pubmed/17384015" target="_blank">GenABEL: an R library for genome-wide association analysis</a></li>
-<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=GenABEL&Search=Search" target="_blank">see our bug tracker</a></li>
-</ul>
+<p></p>
<a name="MetABEL"></a>
-<h3>MetABEL</h3>
+<h3><a href="/drupal6/?q=packages/MetABEL">MetABEL</a></h3>
Meta-analysis of genome-wide SNP association results
-<ul>
-<li><em>Status:</em> Stable</li>
-<li><em>Install:</em> start R, then type install.packages("MetABEL")</li>
-<li><em>Quick start:</em> start R, then library(MetABEL), read the tutorial</li>
-<li><em>Tutorial:</em> see "ABEL tutorial", section "Meta-analysis of GWA scans"</li>
-<li><em>Manual:</em> [ <a href="http://cran.at.r-project.org/web/packages/MetABEL/MetABEL.pdf">PDF</a> | <a href="http://test.genabel.org/old/htmlMetA/00Index.html">HTML</a>]</li>
-<li><em>Reference:</em> no specific reference, please cite <a href="http://www.ncbi.nlm.nih.gov/pubmed/17384015" target="_blank">GenABEL: an R library for genome-wide association analysis</a></li>
-<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=MetABEL&Search=Search" target="_blank">see our bug tracker</a></li>
-</ul>
+Genome-wide association analysis for quantitative, binary and time-till-event traits
+<p></p>
<a name="ProbABEL"></a>
-<h3>ProbABEL</h3>
+<h3><a href="/drupal6/?q=packages/ProbABEL">ProbABEL</a></h3>
Genome-wide association analysis of imputed data
-<ul>
-<li><em>Status:</em> Stable</li>
-<li><em>Install:</em> Download source code, unpack, read ProbABEL/doc/INSTALL [ <a href="http://test.genabel.org/old/software/ProbABEL_0.1-9d.tar.gz">stable source code</a> | Mas OS binary | Win 64 binary | Win 32 binary ]</li>
-<li><em>Quick start:</em> after install, cd examples; sh example_all.sh</li>
-<li><em>Tutorial:</em> would someone like to <a href="http://test.genabel.org/drupal6/?q=node/9">contribute</a> one?</li>
-<li><em>Manual:</em> [ <a href="http://test.genabel.org/old/pdfs/ProbABEL_manual.pdf">PDF</a> | <a href="http://test.genabel.org/old/ProbABEL_manual.html">HTML</a>]</li>
-<li><em>Reference:</em> <a href="http://www.ncbi.nlm.nih.gov/pubmed/20233392" target="_blank">ProbABEL package for genome-wide association analysis of imputed data</a></li>
-<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=ProbABEL&Search=Search" target="_blank">see our bug tracker</a></li>
-</ul>
+<p></p>
<a name="PredictABEL"></a>
-<h3>PredictABEL</h3>
+<h3><a href="/drupal6/?q=packages/PredictABEL">PredictABEL</a></h3>
Assess the performance of risk models for binary outcomes
-<br>
-<a href="http://test.genabel.org/drupal6/?q=node/86">PredictABEL web-page</a>
<p></p>
<a name="DatABEL"></a>
-<h3>DatABEL</h3>
+<h3><a href="/drupal6/?q=packages/DatABEL">DatABEL</a></h3>
File-based access to large matrices stored on HDD in binary format
-<ul>
-<li><em>Status:</em> Stable</li>
-<li><em>Install:</em> start R, then type install.packages("DatABEL")</li>
-<li><em>Quick start:</em> start R, then library(DatABEL); help("DatABEL-package")</li>
-<li><em>Tutorial:</em> see "Introduction to DatABEL" in Tutorials</li>
-<li><em>Manual:</em> [ <a href="http://cran.at.r-project.org/web/packages/DatABEL/DatABEL.pdf">PDF</a> | <a href="http://test.genabel.org/old/htmlDatA/00Index.html">HTML</a> ]</li>
-<li><em>Reference:</em> no specific reference yet, please cite <a href="http://www.ncbi.nlm.nih.gov/pubmed/17384015" target="_blank">GenABEL: an R library for genome-wide association analysis</a></li>
-<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=DatABEL&Search=Search" target="_blank">see our bug tracker</a></li>
-</ul>
+<p></p>
<a name="ParallABEL"></a>
-<h3>ParallABEL</h3>
+<h3><a href="/drupal6/?q=packages/ParallABEL">ParallABEL</a></h3>
Generalized parallelization of Genome-Wide Association Studies
-<br>
-<a href="http://test.genabel.org/drupal6/?q=node/86">PredictABEL web-page</a>
<p></p>
<a name="MixABEL"></a>
-<h3>MixABEL</h3>
+<h3><a href="/drupal6/?q=packages/MixABEL">MixABEL</a></h3>
More mixed models for genome-wide association analysis; experimenting with GSL, multiple input formats, iterator, parallelization through threads.
-<ul>
-<li><em>Status:</em> beta, experimental</li>
-<li><em>Install:</em> Install <a href="http://www.gnu.org/software/gsl/">GNU GSL</a>, download proper distribution and install [ <a href="http://test.genabel.org/old/software/MixABEL_0.0-9.tar.gz">source code</a> | Windows package | Mac OS package] </li>
-<li><em>Quick start:</em> start R, then library(MixABEL); example(GWFGLS)</li>
-<li><em>Tutorial:</em> Will be embed as extension to see "ABEL tutorial", section "GWA analysis in presence of stratiÞcation"</li>
-<li><em>Manual:</em> [ <a href="http://test.genabel.org/old/pdfs/MixABEL.pdf">PDF</a> | <a href="http://test.genabel.org/old/htmlMixA/00Index.html">HTML</a>]</li>
-<li><em>Reference:</em> no specific reference yet, please cite <a href="http://www.ncbi.nlm.nih.gov/pubmed/17384015" target="_blank">GenABEL: an R library for genome-wide association analysis</a></li>
-<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=MixABEL&Search=Search" target="_blank">see our bug tracker</a></li>
-</ul>
+<p></p>
Added: pkg/webpages/pkgDatABEL.html
===================================================================
--- pkg/webpages/pkgDatABEL.html (rev 0)
+++ pkg/webpages/pkgDatABEL.html 2011-03-07 22:52:34 UTC (rev 686)
@@ -0,0 +1,12 @@
+<h3>DatABEL</h3>
+File-based access to large matrices stored on HDD in binary format
+<ul>
+<li><em>Status:</em> Stable</li>
+<li><em>Install:</em> start R, then type install.packages("DatABEL")</li>
+<li><em>Quick start:</em> start R, then library(DatABEL); help("DatABEL-package")</li>
+<li><em>Tutorial:</em> see "Introduction to DatABEL" in Tutorials</li>
+<li><em>Manual:</em> [ <a href="http://cran.at.r-project.org/web/packages/DatABEL/DatABEL.pdf">PDF</a> |
+<a href="/drupal6/?q=manuals/DatABEL">HTML</a> ]</li>
+<li><em>Reference:</em> no specific reference yet, please cite <a href="http://www.ncbi.nlm.nih.gov/pubmed/17384015" target="_blank">GenABEL: an R library for genome-wide association analysis</a></li>
+<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=DatABEL&Search=Search" target="_blank">see our bug tracker</a></li>
+</ul>
Added: pkg/webpages/pkgGenABEL.html
===================================================================
--- pkg/webpages/pkgGenABEL.html (rev 0)
+++ pkg/webpages/pkgGenABEL.html 2011-03-07 22:52:34 UTC (rev 686)
@@ -0,0 +1,14 @@
+<h3>GenABEL</h3>
+Genome-wide association analysis for quantitative, binary and time-till-event traits
+<ul>
+<li><em>Status:</em> Stable</li>
+<li><em>Install:</em> start R, then type install.packages("GenABEL")</li>
+<li><em>Quick start:</em> start R, then type library(GenABEL); demo(ge03d2)</li>
+<li><em>Tutorial:</em> see "ABEL tutorial", starting from section "Introduction to GenABEL"</li>
+<li><em>Manual:</em>
+[ <a href="http://cran.at.r-project.org/web/packages/GenABEL/GenABEL.pdf">PDF</a> |
+<a href="/drupal6/?q=manuals/GenABEL">HTML</a> ]</li>
+<li><em>Reference:</em>
+<a href="http://www.ncbi.nlm.nih.gov/pubmed/17384015" target="_blank">GenABEL: an R library for genome-wide association analysis</a></li>
+<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=GenABEL&Search=Search" target="_blank">see our bug tracker</a></li>
+</ul>
Added: pkg/webpages/pkgMetABEL.html
===================================================================
--- pkg/webpages/pkgMetABEL.html (rev 0)
+++ pkg/webpages/pkgMetABEL.html 2011-03-07 22:52:34 UTC (rev 686)
@@ -0,0 +1,12 @@
+<h3>MetABEL</h3>
+Meta-analysis of genome-wide SNP association results
+<ul>
+<li><em>Status:</em> Stable</li>
+<li><em>Install:</em> start R, then type install.packages("MetABEL")</li>
+<li><em>Quick start:</em> start R, then library(MetABEL), read the tutorial</li>
+<li><em>Tutorial:</em> see "ABEL tutorial", section "Meta-analysis of GWA scans"</li>
+<li><em>Manual:</em> [ <a href="http://cran.at.r-project.org/web/packages/MetABEL/MetABEL.pdf">PDF</a> |
+<a href="/drupal6/?q=manuals/MetABEL">HTML</a> ]</li>
+<li><em>Reference:</em> no specific reference, please cite <a href="http://www.ncbi.nlm.nih.gov/pubmed/17384015" target="_blank">GenABEL: an R library for genome-wide association analysis</a></li>
+<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=MetABEL&Search=Search" target="_blank">see our bug tracker</a></li>
+</ul>
Added: pkg/webpages/pkgMixABEL.html
===================================================================
--- pkg/webpages/pkgMixABEL.html (rev 0)
+++ pkg/webpages/pkgMixABEL.html 2011-03-07 22:52:34 UTC (rev 686)
@@ -0,0 +1,12 @@
+<h3>MixABEL</h3>
+More mixed models for genome-wide association analysis; experimenting with GSL, multiple input formats, iterator, parallelization through threads.
+<ul>
+<li><em>Status:</em> beta, experimental</li>
+<li><em>Install:</em> Install <a href="http://www.gnu.org/software/gsl/">GNU GSL</a>, download proper distribution and install [ <a href="http://test.genabel.org/old/software/MixABEL_0.0-9.tar.gz">source code</a> | Windows package | Mac OS package] </li>
+<li><em>Quick start:</em> start R, then library(MixABEL); example(GWFGLS)</li>
+<li><em>Tutorial:</em> Will be embed as extension to see "ABEL tutorial", section "GWA analysis in presence of stratiÞcation"</li>
+<li><em>Manual:</em> [ <a href="/old/pdfs/MixABEL.pdf">PDF</a> |
+<a href="/drupal6/?q=manuals/MixABEL">HTML</a> ]</li>
+<li><em>Reference:</em> no specific reference yet, please cite <a href="http://www.ncbi.nlm.nih.gov/pubmed/17384015" target="_blank">GenABEL: an R library for genome-wide association analysis</a></li>
+<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=MixABEL&Search=Search" target="_blank">see our bug tracker</a></li>
+</ul>
Modified: pkg/webpages/pkgParallABEL.html
===================================================================
--- pkg/webpages/pkgParallABEL.html 2011-03-07 22:33:30 UTC (rev 685)
+++ pkg/webpages/pkgParallABEL.html 2011-03-07 22:52:34 UTC (rev 686)
@@ -1,4 +1,3 @@
-<a name="ParallABEL"></a>
<h3>ParallABEL</h3>
Generalized parallelization of Genome-Wide Association Studies
<ul>
Modified: pkg/webpages/pkgPredictABEL.html
===================================================================
--- pkg/webpages/pkgPredictABEL.html 2011-03-07 22:33:30 UTC (rev 685)
+++ pkg/webpages/pkgPredictABEL.html 2011-03-07 22:52:34 UTC (rev 686)
@@ -4,7 +4,7 @@
<li><em>Status:</em> Stable</li>
<li><em>Install:</em> start R, then type install.packages("PredictABEL")</li>
<li><em>Quick start:</em> start R, then library(PredictABEL); help("PredictABEL-package")</li>
-<li><em>Tutorial:</em> would someone like to <a href="http://test.genabel.org/drupal6/?q=node/9">contribute</a> one?</li>
+<li><em>Tutorial:</em> would someone like to contribute one?</li>
<li><em>Manual:</em> [ PDF | HTML]</li>
<li><em>Reference:</em> PredictABEL: an R package for the assessment of risk prediction models (accepted to Eur J Epi)</li>
<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=PredictABEL&Search=Search" target="_blank">see our bug tracker</a></li>
Added: pkg/webpages/pkgProbABEL.html
===================================================================
--- pkg/webpages/pkgProbABEL.html (rev 0)
+++ pkg/webpages/pkgProbABEL.html 2011-03-07 22:52:34 UTC (rev 686)
@@ -0,0 +1,12 @@
+<h3>ProbABEL</h3>
+Genome-wide association analysis of imputed data
+<ul>
+<li><em>Status:</em> Stable</li>
+<li><em>Install:</em> Download source code, unpack, read ProbABEL/doc/INSTALL [ <a href="http://test.genabel.org/old/software/ProbABEL_0.1-9d.tar.gz">stable source code</a> | Mas OS binary | Win 64 binary | Win 32 binary ]</li>
+<li><em>Quick start:</em> after install, cd examples; sh example_all.sh</li>
+<li><em>Tutorial:</em> would someone like to <a href="http://test.genabel.org/drupal6/?q=node/9">contribute</a> one?</li>
+<li><em>Manual:</em> [ <a href="/old/pdfs/ProbABEL_manual.pdf">PDF</a> |
+<a href="/drupal6/?q=manuals/ProbABEL">HTML</a> ]</li>
+<li><em>Reference:</em> <a href="http://www.ncbi.nlm.nih.gov/pubmed/20233392" target="_blank">ProbABEL package for genome-wide association analysis of imputed data</a></li>
+<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=ProbABEL&Search=Search" target="_blank">see our bug tracker</a></li>
+</ul>
\ No newline at end of file
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