[Genabel-commits] r645 - in pkg/MetABEL: R man

[noreply at r-forge.r-project.org]

Author: yurii
Date: 2011-02-10 19:06:44 +0100 (Thu, 10 Feb 2011)
New Revision: 645

Modified:
   pkg/MetABEL/R/metagwa.tables.R
   pkg/MetABEL/man/metagwa.files.Rd
Log:
small fix of documentation
this MetABEL version will be sent to CRAN

Modified: pkg/MetABEL/R/metagwa.tables.R
===================================================================
--- pkg/MetABEL/R/metagwa.tables.R	2011-02-10 18:01:11 UTC (rev 644)
+++ pkg/MetABEL/R/metagwa.tables.R	2011-02-10 18:06:44 UTC (rev 645)
@@ -52,7 +52,7 @@
 		df$allele1.y[swall2] <- keep
 	}
 	gc()
-# OK, now put TA->AT, GA->AG etc
+# OK, now put TA->AT, GA->AG etc (A>T>G>C)
 	recX <- which(df$allele1.x=="T" & df$allele2.x=="A")
 	if (length(recX)>0) df <- swap.x(df,recX)
 	recX <- which(df$allele1.x=="G" & df$allele2.x=="A")

Modified: pkg/MetABEL/man/metagwa.files.Rd
===================================================================
--- pkg/MetABEL/man/metagwa.files.Rd	2011-02-10 18:01:11 UTC (rev 644)
+++ pkg/MetABEL/man/metagwa.files.Rd	2011-02-10 18:06:44 UTC (rev 645)
@@ -6,7 +6,7 @@
 stored in files.
 }
 \usage{
-metagwa.files(dir = ".", pops, extens, maf = 5, call = 0.95, phwe = 1e-08, precorrect=TRUE, correct.pooled = F)
+metagwa.files(dir = ".", pops, extens, maf = 5, call = 0.95, phwe = 1e-08, precorrect=TRUE, correct.pooled = FALSE)
 }
 \arguments{
   \item{dir}{path to directory containing files with GWA results}