[Genabel-commits] r644 - in pkg: . webpages

Thu Feb 10 19:01:12 CET 2011

Author: yurii
Date: 2011-02-10 19:01:11 +0100 (Thu, 10 Feb 2011)
New Revision: 644

Added:
   pkg/webpages/
   pkg/webpages/packages.html
Log:
initiated 'webpages' dir to keep source of web-pages

Added: pkg/webpages/packages.html
===================================================================

--- pkg/webpages/packages.html	                        (rev 0)
+++ pkg/webpages/packages.html	2011-02-10 18:01:11 UTC (rev 644)
@@ -0,0 +1,89 @@
+<h3>GenABEL</h3>
+Genome-wide association analysis for quantitative, binary and time-till-event traits
+<ul>
+<li><em>Status:</em> Stable</li>
+<li><em>Install:</em> start R, then type install.packages("GenABEL")</li>
+<li><em>Quick start:</em> start R, then type library(GenABEL); demo(ge03d2)</li>
+<li><em>Tutorial:</em> see "ABEL tutorial", starting from section "Introduction to GenABEL"</li>
+<li><em>Manual:</em> [ PDF | HTML]</li>
+<li><em>Reference:</em> <a href="http://www.ncbi.nlm.nih.gov/pubmed/17384015" target="_blank">GenABEL: an R library for genome-wide association analysis</a></li>
+<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=GenABEL&Search=Search" target="_blank">see our bug tracker</a></li>
+</ul>
+
+
+<h3>MetABEL</h3>
+Meta-analysis of genome-wide SNP association results
+<ul>
+<li><em>Status:</em> Stable</li>
+<li><em>Install:</em> start R, then type install.packages("MetABEL") (!!!)</li>
+<li><em>Quick start:</em> start R, install.packages("MetABEL"); library(MetABEL)</li>
+<li><em>Tutorial:</em> see "ABEL tutorial", section "Meta-analysis of GWA scans"</li>
+<li><em>Manual:</em> [ PDF | HTML]</li>
+<li><em>Reference:</em> no specific reference, please cite <a href="http://www.ncbi.nlm.nih.gov/pubmed/17384015" target="_blank">GenABEL: an R library for genome-wide association analysis</a></li>
+<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=MetABEL&Search=Search" target="_blank">see our bug tracker</a></li>
+</ul>
+
+<h3>ProbABEL</h3>
+Genome-wide association analysis of imputed data
+<ul>
+<li><em>Status:</em> Stable</li>
+<li><em>Install:</em> download source code, see README [ source code | Mas OS binary | Win 64 binary ]</li>
+<li><em>Quick start:</em> after install, cd examples; sh example_all.sh</li>
+<li><em>Tutorial:</em> would someone like to <a href="http://test.genabel.org/drupal6/?q=node/9">contribute</a> one?</li>
+<li><em>Manual:</em> [ PDF | HTML]</li>
+<li><em>Reference:</em> <a href="http://www.ncbi.nlm.nih.gov/pubmed/20233392" target="_blank">ProbABEL package for genome-wide association analysis of imputed data</a></li>
+<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=ProbABEL&Search=Search" target="_blank">see our bug tracker</a></li>
+</ul>
+
+<h3>PredictABEL</h3>
+Assess the performance of risk models for binary outcomes
+<ul>
+<li><em>Status:</em> Stable</li>
+<li><em>Install:</em> start R, then type install.packages("PredictABEL")</li>
+<li><em>Quick start:</em> start R, then library(PredictABEL); help("PredictABEL-package")</li>
+<li><em>Tutorial:</em> would someone like to <a href="http://test.genabel.org/drupal6/?q=node/9">contribute</a> one?</li>
+<li><em>Manual:</em> [ PDF | HTML]</li>
+<li><em>Reference:</em> PredictABEL: an R package for the assessment of risk prediction models (accepted to Eur J Epi)</li>
+<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=PredictABEL&Search=Search" target="_blank">see our bug tracker</a></li>
+</ul>
+
+<h3>ParallABEL</h3>
+WHAT
+<ul>
+<li><em>Status:</em> Stable</li>
+<li><em>Install:</em> ???</li>
+<li><em>Quick start:</em> ???</li>
+<li><em>Tutorial:</em> ???</li>
+<li><em>Manual:</em> [ PDF | HTML]</li>
+<li><em>Reference:</em> <a href="" target="_blank"></a></li>
+<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=ParallABEL&Search=Search" target="_blank">see our bug tracker</a></li>
+</ul>
+
+
+<h3>MixABEL</h3>
+More mixed models for genome-wide association analysis; experimenting with GSL, multiple input formats, iterator, parallelization through threads.
+<ul>
+<li><em>Status:</em> beta, experimental</li>
+<li><em>Install:</em> Install GNU GSL v. >xxx, download source code, R CMD INSTALL MixABEL</li>
+<li><em>Quick start:</em> start R, then library(MixABEL); example(GWFGLS)</li>
+<li><em>Tutorial:</em> Will be embed as extension to see "ABEL tutorial", section "GWA analysis in presence of stratiÞcation"</li>
+<li><em>Manual:</em> [ PDF | HTML]</li>
+<li><em>Reference:</em> no specific reference yet, please cite <a href="http://www.ncbi.nlm.nih.gov/pubmed/17384015" target="_blank">GenABEL: an R library for genome-wide association analysis</a></li>
+<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=MixABEL&Search=Search" target="_blank">see our bug tracker</a></li>
+</ul>
+
+
+The code for latest development versions of all packages are available from <a href="http://r-forge.r-project.org/projects/genabel/" target="_blank">GenABEL on R-forge</a>
+
+<h3></h3>
+WHAT
+<ul>
+<li><em>Status:</em> </li>
+<li><em>Install:</em> </li>
+<li><em>Quick start:</em> </li>
+<li><em>Tutorial:</em> </li>
+<li><em>Manual:</em> [ PDF | HTML]</li>
+<li><em>Reference:</em> </li>
+<li><em>Known issues:</em> <a href="https://r-forge.r-project.org/search/?type_of_search=artifact&group_id=505&atid=2058&words=PACKAGE&Search=Search" target="_blank">see our bug tracker</a></li>
+</ul>
+

