[Biomod-commits] (no subject)

Jenny Williams jenny.williams at kew.org
Wed Aug 14 16:26:33 CEST 2013

I am still trying to get my head around biomod2. I have run through the tutorial a few times, which works really well in a linear format.

But, I want to see the models and assess them at every part of the process. So, I need to:

1: be able to re-access all the files from /.BIOMOD_DATA/ once R is closed and all the file links are lost.
e.g myBiomodModelOut

2: call the summary parameters for the models e.g GLM, I can see the files but not sure how to access them.
>myGLMs <- BIOMOD_LoadModels(myBiomodModelOut, models='GLM')
#just produces a list
   Length     Class      Mode
   1 character character
#summary(GLM) doesn't work, but is the output that I am looking to find.

3. find the split datasets used for each of the iterations BIOMOD_Modeling options; NbRunEval for DataSplit

Any help or pointers in the right direction would be greatly appreciated.
FYI the vignette does not seem to work:

Jenny Williams
Spatial Information Scientist, GIS Unit
Herbarium, Library, Art & Archives Directorate
Royal Botanic Gardens, Kew
Richmond, TW9 3AB, UK

Tel: +44 (0)208 332 5277
email: jenny.williams at kew.org<mailto:jenny.williams at kew.org>

Film: The Forgotten Home of Coffee - Beyond the Gardens<http://www.youtube.com/watch?v=-uDtytKMKpA&sns=tw>
Stories: Coffee Expedition - Ethiopia<http://storify.com/KewGIS/coffee-expedition-ethiopia>
             Kew in Harapan Rainforest Sumatra<http://storify.com/KewGIS/kew-in-harapan-rainforest>
Articles: Seeing the wood for the trees<http://www.kew.org/ucm/groups/public/documents/document/kppcont_060602.pdf>
How Kew's GIS team and South East Asia botanists are working to help conserve and restore a rainforest in Sumatra. Download a pdf of this article here.<http://www.kew.org/ucm/groups/public/documents/document/kppcont_060602.pdf>

The Royal Botanic Gardens, Kew is a non-departmental public body with exempt charitable status, whose principal place of business is at Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB, United Kingdom.

The information contained in this email and any attachments is intended solely for the addressee(s) and may contain confidential or legally privileged information. If you have received this message in error, please return it immediately and permanently delete it. Do not use, copy or disclose the information contained in this email or in any attachment.

Any views expressed in this email do not necessarily reflect the opinions of RBG Kew.

Any files attached to this email have been inspected with virus detection software by RBG Kew before transmission, however you should carry out your own virus checks before opening any attachments. RBG Kew accepts no liability for any loss or damage which may be caused by software viruses.

More information about the Biomod-commits mailing list