[Biomod-commits] Warning in BIOMOD_FormatingData

[Pablo Riul]

Dear Damien,

I see.. Thanks for your attention anyway!

Cheers,
 
Pablo Riul

Departamento de Engenharia e Meio Ambiente
Centro de Ciências Aplicadas e Educação
Universidade Federal da Paraíba - Campus IV
R: Mangueira s/n, Centro CEP: 58.297-000
Rio Tinto - Paraíba - Brasil


________________________________
 De: Damien Georges <damien.georges2 at gmail.com>
Para: Pablo Riul <pabloriul at yahoo.com.br> 
Cc: "biomod-commits at lists.r-forge.r-project.org" <biomod-commits at lists.r-forge.r-project.org> 
Enviadas: Quinta-feira, 13 de Setembro de 2012 4:49
Assunto: Re: [Biomod-commits] Warning in BIOMOD_FormatingData
 

Dear Pablo,

There is no way to extract variables importance from a Ensemble
      model because it's not calculated yet.. We are thinking about the
      way to implement it  because it's a really time consuming step..
      Concerning the response plots, the problem is the same.. 
I will tell you when this functionalities will be ready.

Cheers,

Damien. 

On 12/09/2012 17:59, Pablo Riul wrote:

Dear Damien,
>
>
>Ok, thanks! Just another thing... I'm not sure if you received my anterior message.  I tried to get the var importances of a consensus model using something like getModelsVarImport() to an object created by the BIOMOD_EnsembleModeling() function but it was not possible. Is there any way to get these information? Also, will be possible to get the response plots for this same object?
>
>
>Cheers,
> 
>Pablo Riul
>
>Departamento de Engenharia e Meio Ambiente
>Centro de Ciências Aplicadas e Educação
>Universidade Federal da Paraíba - Campus IV
>R: Mangueira s/n, Centro CEP: 58.297-000
>Rio Tinto - Paraíba - Brasil
>
>
>
>________________________________
> De: Damien Georges <damien.georges2 at gmail.com>
>Para: biomod-commits at lists.r-forge.r-project.org; Pablo Riul <pabloriul at yahoo.com.br> 
>Enviadas: Quarta-feira, 12 de Setembro de 2012 10:52
>Assunto: Re: [Biomod-commits] Warning in BIOMOD_FormatingData
> 
>
>Dear Pablo,
>
>Don't worry about it.. It's just a warning indicating
                  that some function of raster package have changed of
                  names.. 
>I took this into account in the last biomod2 version
                  so warnings will disappear when you'll update the
                  package .
>
>Best,
>
>Damien 
>
>On 12/09/2012 14:46, Pablo Riul wrote:
>
>Dear list,
>>
>>
>>I updated my packages and I'm now using raster 2.0-12. When I created myBiomodData using the BIOMOD_FormatingData function I received the warning below:
>>
>>
>>> myBiomodData <- BIOMOD_FormatingData(resp.var = myResp,expl.var = myExpl,resp.xy = myRespXY,resp.name = myRespName,PA.nb.rep = 1,PA.nb.absences = 1000,PA.strategy = 'random')
>>
>>
>>-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= Mhisp Data Formating -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
>>
>>
>>      ! No data has been set aside for modeling evaluation
>>   > Pseudo Absences Selection checkings...
>>   > random pseudo absences selection
>>   > Pseudo absences are selected in explanatory variables
>>-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= Done -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
>>Warning message:
>>In .local(x, rcl, ...) :
>>  raster function "reclass" has been deprecated and will be removed from the package;
>>Please use "reclassify" instead
>>
>>
>>
>>
>>Its not a problem now, but maybe in next updates of package raster the reclass function may be not available anymore.
>>
>>
>>Cheers,
>> 
>>Pablo Riul
>>
>>Departamento de Engenharia e Meio Ambiente
>>Centro de Ciências Aplicadas e Educação
>>Universidade Federal da Paraíba - Campus IV
>>R: Mangueira s/n, Centro CEP: 58.297-000
>>Rio Tinto - Paraíba - Brasil
>>
>>
>>_______________________________________________
Biomod-commits mailing list Biomod-commits at lists.r-forge.r-project.org https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/biomod-commits
>
>
>
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