<html><body><div style="color:#000; background-color:#fff; font-family:times new roman, new york, times, serif;font-size:18pt"><div><span>Dear Damien,</span></div><div style="color: rgb(0, 0, 0); font-size: 24px; font-family: 'times new roman', 'new york', times, serif; background-color: transparent; font-style: normal; "><span><br></span></div><div style="color: rgb(0, 0, 0); font-size: 24px; font-family: 'times new roman', 'new york', times, serif; background-color: transparent; font-style: normal; ">I see.. Thanks for your attention anyway!</div><div style="color: rgb(0, 0, 0); font-size: 24px; font-family: 'times new roman', 'new york', times, serif; background-color: transparent; font-style: normal; "><br></div><div style="color: rgb(0, 0, 0); font-size: 24px; font-family: 'times new roman', 'new york', times, serif; background-color: transparent; font-style: normal; ">Cheers,</div><div> </div><div>Pablo Riul<br><br>Departamento de Engenharia e
Meio Ambiente<br>Centro de Ciências Aplicadas e Educação<br>Universidade Federal da Paraíba - Campus IV<br>R: Mangueira s/n, Centro CEP: 58.297-000<br>Rio Tinto - Paraíba - Brasil</div><div><br></div> <div style="font-size: 18pt; font-family: 'times new roman', 'new york', times, serif; "> <div style="font-size: 12pt; font-family: 'times new roman', 'new york', times, serif; "> <div dir="ltr"> <font size="2" face="Arial"> <hr size="1"> <b><span style="font-weight:bold;">De:</span></b> Damien Georges <damien.georges2@gmail.com><br> <b><span style="font-weight: bold;">Para:</span></b> Pablo Riul <pabloriul@yahoo.com.br> <br><b><span style="font-weight: bold;">Cc:</span></b> "biomod-commits@lists.r-forge.r-project.org" <biomod-commits@lists.r-forge.r-project.org> <br> <b><span style="font-weight: bold;">Enviadas:</span></b> Quinta-feira, 13 de Setembro de 2012 4:49<br> <b><span style="font-weight: bold;">Assunto:</span></b> Re:
[Biomod-commits] Warning in BIOMOD_FormatingData<br> </font> </div> <br><div id="yiv2019408940">
<div>
<div class="yiv2019408940moz-cite-prefix">Dear Pablo,<br>
<br>
There is no way to extract variables importance from a Ensemble
model because it's not calculated yet.. We are thinking about the
way to implement it because it's a really time consuming step..
Concerning the response plots, the problem is the same.. <br>
I will tell you when this functionalities will be ready.<br>
<br>
Cheers,<br>
<br>
Damien. <br>
<br>
On 12/09/2012 17:59, Pablo Riul wrote:<br>
</div>
<blockquote type="cite">
<div style="color: rgb(0, 0, 0); background-color: rgb(255, 255, 255); font-size: 18pt; font-family: 'times new roman', 'new york', times, serif; ">
<div><span>Dear Damien,</span></div>
<div style="color: rgb(0, 0, 0); font-size: 24px; background-color: transparent; font-style: normal; font-family: 'times new roman', 'new york', times, serif; "><span><br>
</span></div>
<div style="color: rgb(0, 0, 0); font-size: 24px; background-color: transparent; font-style: normal; font-family: 'times new roman', 'new york', times, serif; "><span>Ok, thanks! Just
another thing... I'm not sure if you received my anterior
message. </span> I tried to get the var importances of a
consensus model using something like getModelsVarImport() to
an object created by the BIOMOD_EnsembleModeling() function
but it was not possible. Is there any way to get these
information? Also, will be possible to get the response plots
for this same object?</div>
<div style="color: rgb(0, 0, 0); font-size: 24px; background-color: transparent; font-style: normal; font-family: 'times new roman', 'new york', times, serif; "><br>
</div>
<div style="color: rgb(0, 0, 0); font-size: 24px; background-color: transparent; font-style: normal; font-family: 'times new roman', 'new york', times, serif; ">Cheers,</div>
<div> </div>
<div>Pablo Riul<br>
<br>
Departamento de Engenharia e Meio Ambiente<br>
Centro de Ciências Aplicadas e Educação<br>
Universidade Federal da Paraíba - Campus IV<br>
R: Mangueira s/n, Centro CEP: 58.297-000<br>
Rio Tinto - Paraíba - Brasil</div>
<div><br>
</div>
<div style="font-size: 18pt; font-family: 'times new roman', 'new york', times, serif; ">
<div style="font-size: 12pt; font-family: 'times new roman', 'new york', times, serif; ">
<div dir="ltr"> <font size="2" face="Arial">
<hr size="1"> <b><span style="font-weight:bold;">De:</span></b>
Damien Georges <a rel="nofollow" class="yiv2019408940moz-txt-link-rfc2396E" ymailto="mailto:damien.georges2@gmail.com" target="_blank" href="mailto:damien.georges2@gmail.com"><damien.georges2@gmail.com></a><br>
<b><span style="font-weight:bold;">Para:</span></b>
<a rel="nofollow" class="yiv2019408940moz-txt-link-abbreviated" ymailto="mailto:biomod-commits@lists.r-forge.r-project.org" target="_blank" href="mailto:biomod-commits@lists.r-forge.r-project.org">biomod-commits@lists.r-forge.r-project.org</a>; Pablo Riul
<a rel="nofollow" class="yiv2019408940moz-txt-link-rfc2396E" ymailto="mailto:pabloriul@yahoo.com.br" target="_blank" href="mailto:pabloriul@yahoo.com.br"><pabloriul@yahoo.com.br></a> <br>
<b><span style="font-weight:bold;">Enviadas:</span></b>
Quarta-feira, 12 de Setembro de 2012 10:52<br>
<b><span style="font-weight:bold;">Assunto:</span></b>
Re: [Biomod-commits] Warning in BIOMOD_FormatingData<br>
</font> </div>
<br>
<div id="yiv2019408940">
<div>
<div class="yiv2019408940moz-cite-prefix">Dear Pablo,<br>
<br>
Don't worry about it.. It's just a warning indicating
that some function of raster package have changed of
names.. <br>
I took this into account in the last biomod2 version
so warnings will disappear when you'll update the
package .<br>
<br>
Best,<br>
<br>
Damien <br>
<br>
On 12/09/2012 14:46, Pablo Riul wrote:<br>
</div>
<blockquote type="cite">
<div style="color: rgb(0, 0, 0); background-color: rgb(255, 255, 255); font-size: 18pt; font-family: 'times new roman', 'new york', times, serif; ">
<div><span>Dear list,</span></div>
<div style="color: rgb(0, 0, 0); font-size: 24px; background-color: transparent; font-style: normal; font-family: 'times new roman', 'new york', times, serif; "><span><br>
</span></div>
<div style="color: rgb(0, 0, 0); font-size: 24px; background-color: transparent; font-style: normal; font-family: 'times new roman', 'new york', times, serif; "><span>I updated my packages and I'm now
using raster 2.0-12. When I created myBiomodData
using the BIOMOD_FormatingData function I
received the warning below:</span></div>
<div style="color: rgb(0, 0, 0); font-size: 24px; background-color: transparent; font-style: normal; font-family: 'times new roman', 'new york', times, serif; "><span><br>
</span></div>
<div style="color: rgb(0, 0, 0); font-size: 24px; background-color: transparent; font-style: normal; font-family: 'times new roman', 'new york', times, serif; "><span>
<div style="margin:0.0px 0.0px 0.0px 0.0px;font:14.2px Monaco;color:#1c39f6;"><span style="color:#99228d;">> </span>myBiomodData
<- BIOMOD_FormatingData(resp.var =
myResp,expl.var = myExpl,resp.xy =
myRespXY,resp.name = myRespName,PA.nb.rep =
1,PA.nb.absences = 1000,PA.strategy =
'random')</div>
<div style="margin:0.0px 0.0px 0.0px 0.0px;font:14.2px Monaco;min-height:19.0px;"><br>
</div>
<div style="margin:0.0px 0.0px 0.0px 0.0px;font:14.2px Monaco;">-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
Mhisp Data Formating
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=</div>
<div style="margin:0.0px 0.0px 0.0px 0.0px;font:14.2px Monaco;min-height:19.0px;"><br>
</div>
<div style="margin:0.0px 0.0px 0.0px 0.0px;font:14.2px Monaco;"> ! No data has
been set aside for modeling evaluation</div>
<div style="margin:0.0px 0.0px 0.0px 0.0px;font:14.2px Monaco;"> > Pseudo
Absences Selection checkings...</div>
<div style="margin:0.0px 0.0px 0.0px 0.0px;font:14.2px Monaco;"> > random
pseudo absences selection</div>
<div style="margin:0.0px 0.0px 0.0px 0.0px;font:14.2px Monaco;"> > Pseudo
absences are selected in explanatory variables</div>
<div style="margin:0.0px 0.0px 0.0px 0.0px;font:14.2px Monaco;">-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
Done
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=</div>
<div style="margin:0.0px 0.0px 0.0px 0.0px;font:14.2px Monaco;color:#ff1f17;">Warning
message:</div>
<div style="margin:0.0px 0.0px 0.0px 0.0px;font:14.2px Monaco;color:#ff1f17;">In
.local(x, rcl, ...) :</div>
<div style="margin:0.0px 0.0px 0.0px 0.0px;font:14.2px Monaco;color:#ff1f17;">
raster function "reclass" has been deprecated
and will be removed from the package;</div>
<div style="margin:0.0px 0.0px 0.0px 0.0px;font:14.2px Monaco;color:#ff1f17;">Please
use "reclassify" instead</div>
<div style="margin:0.0px 0.0px 0.0px 0.0px;font:14.2px Monaco;color:#ff1f17;"><br>
</div>
<div style="margin:0.0px 0.0px 0.0px 0.0px;font:14.2px Monaco;color:#ff1f17;"><br>
</div>
</span></div>
<div>Its not a problem now, but maybe in next
updates of package raster the reclass function may
be not available anymore.</div>
<div><br>
</div>
<div style="color: rgb(0, 0, 0); font-size: 24px; background-color: transparent; font-style: normal; font-family: 'times new roman', 'new york', times, serif; ">Cheers,</div>
<div style="color: rgb(0, 0, 0); font-size: 24px; background-color: transparent; font-style: normal; font-family: 'times new roman', 'new york', times, serif; "> </div>
<div>Pablo Riul<br>
<br>
Departamento de Engenharia e Meio Ambiente<br>
Centro de Ciências Aplicadas e Educação<br>
Universidade Federal da Paraíba - Campus IV<br>
R: Mangueira s/n, Centro CEP: 58.297-000<br>
Rio Tinto - Paraíba - Brasil</div>
</div>
<br>
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