[Biomod-commits] Models Error

[Wilfried Thuiller]

Sounds like your data are not really well-formatted.

Could you perhaps look at the final DataBIOMOD? 

head(DataBIOMOD)

how does it look like? 



Le 15 sept. 2011 à 10:25, Antonio Canepa a écrit :

> Hi Wilfried,
> 
> The commads for the Initial.State are
> 
> Initial.State(Response=Sp.Env[,c(19,20,21)], Explanatory=Sp.Env[,4:18], IndependentResponse=Sp.Env[,c(19,20,21)], IndependentExplanatory=Sp.Env[,4:18])
> 
> 
> And the comands for the Models() --> Here is I get the error message
> 
> Models(GLM = T, TypeGLM = "poly", Test = "AIC", GBM = F, No.trees = 2000, GAM = T, Spline = 3, CTA = T, CV.tree = 50, ANN = F, CV.ann = 5, SRE = F, quant=0.025, FDA = F, MARS = F, RF = F, NbRunEval = 3, DataSplit = 80,Yweights = NULL, Roc = TRUE, Optimized.Threshold.Roc = T,Kappa = T, TSS = T, KeepPredIndependent = T, VarImport = 5, NbRepPA=2, strategy="circles", coor=CoorXY[,1:2], distance=2, nb.absences=1000)
> 
> As you will see, I´m only trying run a GLM a CTA and a GAM.
> 
> Thanks so much!,
> 
> Antonio
> 
> 
> 
> 
> 2011/9/15 Wilfried Thuiller <wilfried.thuiller at ujf-grenoble.fr>
> Dear Antonio,
> 
> Could you please paste the command lines you used please?
> 
> Wilfried
> 
> 
> Le 15 sept. 2011 à 10:13, Antonio Canepa a écrit :
> 
>> Hi,
>> My name is Antonio, First of all, let me congratulation to all of you because the package and the community BIOMOD is excelent.
>> Second, you have to know that I'm absolutely  new with BIOMOD, and I have a problem that seems to be easy but I can't solve it.
>> I have constructed my Matrix, with the structure that the example of Sp.Env data in BIOMOD, but when I want to run the models the follor error message apperas:
>> Error en `[.data.frame`(tr, , 4) : undefined columns selected
>> 
>> I review the data dreated by the Initial.State() and is the same than for the BIOMOD example....
>> 
>> I don´t know if its useful for the question but I'm ussing Tinn-R, but if I run the Practical or Manual for BIOMOD It runs perfectly!
>> 
>> I'll appreciate so much your help!..and sorry if its a very basic question!
>> 
>> Best Regards to all of you
>> 
>> Antonio
>> 
>> 
>> -- 
>> Antonio Canepa Oneto
>> PhD student
>> Dept. Biologia Marina i Oceanografia
>> Institut de Ciencies Del Mar CMIMA, CSIC 
>> Ps. Marítim de la Barceloneta,37-49, c.p. 08003
>> BARCELONA, Catalunya,Spain 
>> Tel: 34-628320778 
>> e-mail: canepa at icm.csic.es 
>>            ajcanepa at gmail.com
>> 
>> _______________________________________________
>> Biomod-commits mailing list
>> Biomod-commits at lists.r-forge.r-project.org
>> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/biomod-commits
> 
> --------------------------
> Dr. Wilfried Thuiller
> Laboratoire d'Ecologie Alpine, UMR CNRS 5553
> Université Joseph Fourier
> BP53, 38041 Grenoble cedex 9, France
> tel: +33 (0)4 76 51 44 97
> fax: +33 (0)4 76 51 42 79
> 
> Email: wilfried.thuiller at ujf-grenoble.fr
> Personal website: http://www.will.chez-alice.fr
> Team website: http://www-leca.ujf-grenoble.fr/equipes/emabio.htm
> 
> FP6 European MACIS project: http://www.macis-project.net
> FP6 European EcoChange project: http://www.ecochange-project.eu
> 
> 
> 
> 
> 
> 
> 
> 
> 
> -- 
> Antonio Canepa Oneto
> PhD student
> Dept. Biologia Marina i Oceanografia
> Institut de Ciencies Del Mar CMIMA, CSIC 
> Ps. Marítim de la Barceloneta,37-49, c.p. 08003
> BARCELONA, Catalunya,Spain 
> Tel: 34-628320778 
> e-mail: canepa at icm.csic.es 
>            ajcanepa at gmail.com
> 

--------------------------
Dr. Wilfried Thuiller
Laboratoire d'Ecologie Alpine, UMR CNRS 5553
Université Joseph Fourier
BP53, 38041 Grenoble cedex 9, France
tel: +33 (0)4 76 51 44 97
fax: +33 (0)4 76 51 42 79

Email: wilfried.thuiller at ujf-grenoble.fr
Personal website: http://www.will.chez-alice.fr
Team website: http://www-leca.ujf-grenoble.fr/equipes/emabio.htm

FP6 European MACIS project: http://www.macis-project.net
FP6 European EcoChange project: http://www.ecochange-project.eu






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