[Biomod-commits] Models Error

[Antonio Canepa]

Hi Wilfried,

The commads for the Initial.State are

Initial.State(Response=Sp.Env[,c(19,20,21)], Explanatory=Sp.Env[,4:18],
IndependentResponse=Sp.Env[,c(19,20,21)],
IndependentExplanatory=Sp.Env[,4:18])


And the comands for the Models() --> Here is I get the error message

Models(GLM = T, TypeGLM = "poly", Test = "AIC", GBM = F, No.trees = 2000,
GAM = T, Spline = 3, CTA = T, CV.tree = 50, ANN = F, CV.ann = 5, SRE = F,
quant=0.025, FDA = F, MARS = F, RF = F, NbRunEval = 3, DataSplit =
80,Yweights = NULL, Roc = TRUE, Optimized.Threshold.Roc = T,Kappa = T, TSS =
T, KeepPredIndependent = T, VarImport = 5, NbRepPA=2, strategy="circles",
coor=CoorXY[,1:2], distance=2, nb.absences=1000)

As you will see, I´m only trying run a GLM a CTA and a GAM.

Thanks so much!,

Antonio




2011/9/15 Wilfried Thuiller <wilfried.thuiller at ujf-grenoble.fr>

> Dear Antonio,
>
> Could you please paste the command lines you used please?
>
> Wilfried
>
>
> Le 15 sept. 2011 à 10:13, Antonio Canepa a écrit :
>
> Hi,
> My name is Antonio, First of all, let me congratulation to all of you
> because the package and the community BIOMOD is excelent.
> Second, you have to know that I'm absolutely  new with BIOMOD, and I have a
> problem that seems to be easy but I can't solve it.
> I have constructed my Matrix, with the structure that the example of Sp.Env
> data in BIOMOD, but when I want to run the models the follor error message
> apperas:
> *Error en `[.data.frame`(tr, , 4) : undefined columns selected*
>
> I review the data dreated by the Initial.State() and is the same than for
> the BIOMOD example....
>
> I don´t know if its useful for the question but I'm ussing Tinn-R, but if I
> run the Practical or Manual for BIOMOD It runs perfectly!
>
> I'll appreciate so much your help!..and sorry if its a very basic question!
>
> Best Regards to all of you
>
> Antonio
>
>
> --
> Antonio Canepa Oneto
> PhD student
> Dept. Biologia Marina i Oceanografia
> Institut de Ciencies Del Mar CMIMA, CSIC
> Ps. Marítim de la Barceloneta,37-49, c.p. 08003
> BARCELONA, Catalunya,Spain
> Tel: 34-628320778
> e-mail: canepa at icm.csic.es
>            ajcanepa at gmail.com
>
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>
>
> --------------------------
> Dr. Wilfried Thuiller
> Laboratoire d'Ecologie Alpine, UMR CNRS 5553
> Université Joseph Fourier
> BP53, 38041 Grenoble cedex 9, France
> tel: +33 (0)4 76 51 44 97
> fax: +33 (0)4 76 51 42 79
>
> Email: wilfried.thuiller at ujf-grenoble.fr
> Personal website: http://www.will.chez-alice.fr
> Team website: http://www-leca.ujf-grenoble.fr/equipes/emabio.htm
>
> FP6 European MACIS project: http://www.macis-project.net
> FP6 European EcoChange project: http://www.ecochange-project.eu
>
>
>
>
>
>
>


-- 
Antonio Canepa Oneto
PhD student
Dept. Biologia Marina i Oceanografia
Institut de Ciencies Del Mar CMIMA, CSIC
Ps. Marítim de la Barceloneta,37-49, c.p. 08003
BARCELONA, Catalunya,Spain
Tel: 34-628320778
e-mail: canepa at icm.csic.es
           ajcanepa at gmail.com
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