[Basta-users] Obtaining posterior values from iterations

[Owen Jones]

Dear Jenni,

If you have a basta object called "out", you can access the parameter traces (which are the individual iterations) by calling:

out$params

This will be a matrix with several columns (one for each parameter), and lots of rows (one for each iteration).

I hope this helps!

Cheers,
Owen


On 28 Mar 2013, at 13:33, "Graham, Jennifer" <jlg208 at exeter.ac.uk> wrote:

> Hey BaSTA users,
> 
> I would like to look at and plot the posterior distributions using the simulation results not just the estimates provided in the coefficient table, similar to the posterior distributions in Fig.5 in Colchero & Clark 2012, which appears to incorporate the asymmetry of the results. 
> 
> Does BaSTA save the individual iterations for manual plotting and calculations?  
> 
> Thanks
> 
> Jenni
> 
> --------------------------------------------------------------------------------
> Jennifer Graham
> PhD Researcher
> Centre for Ecology and Conservation
> University of Exeter, Cornwall Campus
> Tremough
> Penryn
> Cornwall
> TR10 9EZ
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