<html><head><meta http-equiv="Content-Type" content="text/html charset=iso-8859-1"><base href="x-msg://789/"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Dear Jenni,<div><br></div><div>If you have a basta object called "out", you can access the parameter traces (which are the individual iterations) by calling:</div><div><br></div><div>out$params</div><div><br></div><div>This will be a matrix with several columns (one for each parameter), and lots of rows (one for each iteration).</div><div><br></div><div>I hope this helps!</div><div><br></div><div>Cheers,</div><div>Owen</div><div><br></div><div><br><div><div>On 28 Mar 2013, at 13:33, "Graham, Jennifer" <<a href="mailto:jlg208@exeter.ac.uk">jlg208@exeter.ac.uk</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div ocsi="0" fpstyle="1" style="font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="direction: ltr; font-family: Tahoma; font-size: 10pt; "><div style="margin-top: 0px; margin-bottom: 0px; ">Hey BaSTA users,</div><div style="margin-top: 0px; margin-bottom: 0px; "><br></div><div style="margin-top: 0px; margin-bottom: 0px; ">I would like to look at and plot the posterior distributions using the simulation results not just the estimates provided in the coefficient table, similar to the posterior distributions in Fig.5 in Colchero & Clark 2012, which appears to incorporate the asymmetry of the results.<span class="Apple-converted-space"> </span><br></div><div style="margin-top: 0px; margin-bottom: 0px; "><br><span></span></div><div style="margin-top: 0px; margin-bottom: 0px; "><span></span>Does BaSTA save the individual iterations for manual plotting and calculations?<span class="Apple-converted-space"> </span><span> </span></div><div style="margin-top: 0px; margin-bottom: 0px; "><br></div><div style="margin-top: 0px; margin-bottom: 0px; ">Thanks</div><div style="margin-top: 0px; margin-bottom: 0px; "><br></div><div style="margin-top: 0px; margin-bottom: 0px; ">Jenni</div><div><br><div class="BodyFragment"><font size="2"><div class="PlainText">--------------------------------------------------------------------------------<br>Jennifer Graham<br>PhD Researcher<br>Centre for Ecology and Conservation<br>University of Exeter, Cornwall Campus<br>Tremough<br>Penryn<br>Cornwall<br>TR10 9EZ</div></font></div></div></div>_______________________________________________<br>Basta-users mailing list<br><a href="mailto:Basta-users@lists.r-forge.r-project.org">Basta-users@lists.r-forge.r-project.org</a><br><a href="https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/basta-users">https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/basta-users</a><br></div></blockquote></div><br></div></body></html>