[adegenet-forum] read.PLINK error message

[Ashley A Dickinson]

Hello,

I am trying to use adagenet (v.2.1.10) to do DAPC, but I am receiving an
error message I can't figure out. I used PLINK2 to convert a vcf file to a
.raw file for SNP data obtained on 78 individuals using RADseq. I then
tried to use the read.PLINK function to import into genlight objects

> read.PLINK("myfile.raw", map.file = "myfile.map")

Reading PLINK raw format into a genlight object...
Reading loci information...
Reading and converting genotypes...
.Error in read.PLINK("myfile.raw", map.file = "myfile.map") :
  some individuals do not have -5 SNPs.


I have tried again with multiple different vcf output files that I had
created with different parameters and filtering steps just to make sure
that it wasn't that one file, but I get the same error each time. The data
set has >8000 SNPs within 730 loci.

Any ideas or recommendations are appreciated!

-Ashley
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