[adegenet-forum] problem installation adegenet Ubuntu

[Didier AURELLE]

Hi

thank you for your answer, here is what I did:

completely reinstall R

then specifically install gfortran-7 as explained here: 
https://www.howtoinstall.me/ubuntu/18-04/gfortran-7/

and then the installation of adegenet worked

thanks!

Didier


Le 05/10/2020 à 17:49, Zhian N. Kamvar a écrit :
> You might try the solutions in this thread: 
> https://github.com/vegandevs/vegan/issues/365
>
>
>> Date: Fri, 2 Oct 2020 15:23:51 +0200
>> From: Didier AURELLE <didier.aurelle at mio.osupytheas.fr>
>> To: Roman Luštrik <roman.lustrik at biolitika.si>
>> Cc: adegenet-forum <adegenet-forum at lists.r-forge.r-project.org>
>> Subject: Re: [adegenet-forum] problem installation adegenet Ubuntu
>> Message-ID: <a690508e-981f-9df6-a875-12e27615e276 at mio.osupytheas.fr>
>> Content-Type: text/plain; charset="utf-8"; Format="flowed"
>>
>> Hi Roman
>>
>> I tried to do this, apparently it was already installed, and I still get
>> the same error
>>
>> thanks
>>
>> Didier
>>
>>
>> Le 02/10/2020 à 12:07, Roman Luštrik a écrit :
>>> Did you install essential tools for building?
>>>
>>> sudo apt install build-essential
>>>
>>> Cheers,
>>> Roman
>>>
>>> ---
>>> “If we have data, let’s look at data. If all we have are opinions,
>>> let’s go with mine.” -- Jim Barksdale
>>>
>>>
>>>
>>> ---- On Fri, 02 Oct 2020 11:35:52 +0200 *Didier AURELLE
>>> <didier.aurelle at mio.osupytheas.fr
>>> <mailto:didier.aurelle at mio.osupytheas.fr>>* wrote ----
>>>
>>>      Dear all,
>>>
>>>
>>>      I tried to install adegenet on R version 3.6.3 on Ubuntu 20.04.1
>>>      with RStudio
>>>
>>>      I used the command :
>>>
>>>      install_github("thibautjombart/adegenet")
>>>
>>>
>>>      I first got an error that libgfortran.so.4 was not found so I
>>>      created a symbolic link toward libgfortran.so.5 which was present
>>>      in /usr/lib/x86_64-linux-gnu
>>>
>>>
>>>      Then I got a new error :
>>>
>>>      usr/lib/x86_64-linux-gnu/libgfortran.so.5: version `GFORTRAN_7'
>>>      not found (required by
>>> /home/aurelle/R/x86_64-pc-linux-gnu-library/3.6/vegan/libs/vegan.so)
>>>
>>>
>>>      If I type in a terminal
>>>
>>>      gfortran - - version
>>>
>>>
>>>      I get
>>>
>>>      GNU Fortran (Ubuntu 9.3.0-10ubuntu2) 9.3.0
>>>
>>>
>>>      So I don’t know what to do. Do you have any idea ?
>>>
>>>
>>>      Thanks
>>>
>>>      Didier
>>>
>>>
>>>
>>>      _______________________________________________
>>>      adegenet-forum mailing list
>>>      adegenet-forum at lists.r-forge.r-project.org
>>>      <mailto:adegenet-forum at lists.r-forge.r-project.org>
>>> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/adegenet-forum
>>>
>>>
>>>
> _______________________________________________
> adegenet-forum mailing list
> adegenet-forum at lists.r-forge.r-project.org
> https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/adegenet-forum
--