[adegenet-forum] pairwise.fst for self pollinated crops

[Thibaut Jombart]

Hello,

You may be better off looking into similar functions in the hierfstats
package, which is fully dedicated to Fst estimators. However, I fear if
there is little variance in your data, you may struggle to quantify
population structure.

Best
Thibaut

--
Dr Thibaut Jombart
Associate Professor in Outbreak Analytics, London School of Hygiene and
Tropical Medicine
Senior Lecturer in Genetic Analysis, Imperial College London
President of RECON: repidemicsconsortium.org
https://thibautjombart.netlify.com
Twitter: @TeebzR


On Mon, 15 Oct 2018 at 08:24, Boby Mathew <bobyboby at gmail.com> wrote:

> Dear All,
> I was trying to estimate the FSt between the populations using SNP data. I
> would like to use the function pairwise.fst(). However my data set is a
> rice population and there is very very few heterozygous and can I use
> pairwise.fst()
>
> Kind regards,
> Boby Mathew
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