[adegenet-forum] How to convert genind (or genpop) to genepop format ?

[Cathy Bouffartigue]

Hi everybody,

I’d like to compare null allele frequency on microsatellites estimated by Brookfield and Dempster algorithm as Dempster might be more accurate (see  Chapuis and Estoup, 2007)
To my knowledge, adegenet package calculate Chakraborty and Brookfield null allele frequencies. However, Dempster algorithm is not implemented nor on adegent neither on any R package. Am I right ?
If it is so, do anyone knows or already have a script to convert genind/genpop to Genepop format (http://genepop.curtin.edu.au/help_input.html ) ?

Thank you very much for your help,

Cathy

[Description : cid:43BA2359-25C8-49EA-9D28-BCFD56FD115B at toulouse.inra.fr]
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Cathy Bouffartigue
Doctorante/ PhD student
cathy.bouffartigue at inra.fr<mailto:cathy.bouffartigue at inra.fr>

Centre Inra Occitanie-Toulouse
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