[adegenet-forum] DAPC- Coloring Points by Source Population, but Group Point by Genetic Cluster

[Thibaut Jombart]

Hi there

this is not exactly recommended practice, as the color is supposed to
reflect the clustering. If you want to do this, the best way is to make the
plot from scratch using adegraphics:
https://cran.r-project.org/web/packages/adegraphics/vignettes/adegraphics.html

Best
Thibaut


--
Dr Thibaut Jombart
Lecturer, Department of Infectious Disease Epidemiology, Imperial College
London
Head of RECON: repidemicsconsortium.org
WHO Consultant - outbreak analysis
https://thibautjombart.netlify.com
Twitter: @TeebzR
+44(0)20 7594 3658

On 13 April 2018 at 16:10, Alicia Reigel <reige012 at gmail.com> wrote:

> Hello,
>
> I'm having some trouble working through an issue in DAPC. I've been using
> scatter and DAPC to plot my points from microsatellite data. I have
> definitely figured out how to cluster and color the points for the
> individuals by their genetic cluster and by their original populations, but
> what I can't determine is how to color each point by the original source
> population, but cluster them by their genetic cluster.  Can anyone help me
> with this?
>
> Thanks,
> Alicia Reigel
>
> --
> Ph.D. Candidate, Louisiana State University | Michael E.Hellberg Lab
> M.S. Biology, Georgia Southern University | Daniel F. Gleason Lab
> Lab Phone: (225) 578-9114
> Email: areige1 at lsu.edu
> Website: aliciamreigel.wordpress.com
>
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