[adegenet-forum] allele frequency

[Thibaut Jombart]

If you already have allele frequencies, you can use the DAPC directly on
this data matrix. Otherwise, if you have allele counts data pooled by
groups of individuals, you can use the genpop constructor to turn this
matrix into a genpop object (see ?genpop).

Best
Thibaut


--
Dr Thibaut Jombart
Lecturer, Department of Infectious Disease Epidemiology, Imperial College
London
Head of RECON: repidemicsconsortium.org
sites.google.com/site/thibautjombart/
github.com/thibautjombart
Twitter: @TeebzR <http://twitter.com/TeebzR>

On 25 October 2016 at 14:18, Bernadette Julier <bernadette.julier at inra.fr>
wrote:

> Hello,
>
>
>
> I have used a genotyping method (GBS) on pools of heterozygous individuals
> so I get a frequency of alleles for each population and each marker, with
> several replications of the populations. In addition, I am working on an
> autotetraploid species.
>
>
>
> I would like to use dapc procedure of adegenet package.
>
> How can I enter the data in a file with the genepop format ?
>
>
>
> Thanks
>
> Bernadette
>
> INRA Lusignan
>
>
>
>
>
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