[adegenet-forum] genetic distances HGDP

Davide Piffer pifferdavide at gmail.com
Wed Apr 13 11:35:31 CEST 2016


I need to compute pairwise genetic distances for the HGDP populations.
Adegenet works with genind and genpop objects.
I downloaded the HGDP file from: http://www.hagsc.org/hgdp/files.html
Can anyone explain to me how to convert this to work with adegenet?
I know that calculation of genetic distances requires conversion of genind
to genpop object. However, being new to this, I do not know which format
the HGDP-CEPH *HGDP_FinalReport_Forward.txt* file is. Is it genind ? If
not, how do I convert this to genind?

Many thanks in advance,

Davide
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.r-forge.r-project.org/pipermail/adegenet-forum/attachments/20160413/7bdd7e85/attachment.html>


More information about the adegenet-forum mailing list