[adegenet-forum] replacing NAs

[Jombart, Thibaut]

Hi there,

this has been documented and discussed before; you can browse the forum using:
http://adegenet.r-forge.r-project.org/search.html

Fix has been posted there:
https://github.com/thibautjombart/adegenet/issues/71

Short answer: updating to adegenet devel should sort the problem.
Cheers
Thibaut




________________________________
From: adegenet-forum-bounces at lists.r-forge.r-project.org [adegenet-forum-bounces at lists.r-forge.r-project.org] on behalf of Smith, Matt [matt_smith at fws.gov]
Sent: 03 November 2015 18:55
To: adegenet-forum at lists.r-forge.r-project.org
Subject: [adegenet-forum] replacing NAs

Hello,

I am trying to create a genind object from a genepop file, then replace missing data with mean. Missing data is indicated by 0's in the genepop file. When I check for NAs, none are recognized. Why isn't adegenet recognizing missing data in my genepop file?

> Coho <- read.genepop("Input/20pop10loci.gen", ncode = 3L)

 Converting data from a Genepop .gen file to a genind object...


File description:  coho data dec 2014

...done.

> sum(is.na<http://is.na/>(Coho$tab))
[1] 0


I'm new to this, so sorry for any duplicate posts.
Thank you!


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