<html dir="ltr">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
<style id="owaParaStyle" type="text/css">P {margin-top:0;margin-bottom:0;}</style>
</head>
<body ocsi="0" fpstyle="1">
<div style="direction: ltr;font-family: Tahoma;color: #000000;font-size: 10pt;">Hi there,
<br>
<br>
this has been documented and discussed before; you can browse the forum using:<br>
<a href="http://adegenet.r-forge.r-project.org/search.html" target="_blank">http://adegenet.r-forge.r-project.org/search.html</a><br>
<br>
Fix has been posted there:<br>
<a href="https://github.com/thibautjombart/adegenet/issues/71" target="_blank">https://github.com/thibautjombart/adegenet/issues/71</a><br>
<br>
Short answer: updating to adegenet devel should sort the problem.<br>
Cheers<br>
Thibaut<br>
<div><br>
<div style="font-family:Tahoma; font-size:13px">
<div class="BodyFragment"><font size="2"><span style="font-size:10pt">
<div class="PlainText"> <br>
<br>
<br>
</div>
</span></font></div>
</div>
</div>
<div style="font-family: Times New Roman; color: #000000; font-size: 16px">
<hr tabindex="-1">
<div style="direction: ltr;" id="divRpF995139"><font color="#000000" face="Tahoma" size="2"><b>From:</b> adegenet-forum-bounces@lists.r-forge.r-project.org [adegenet-forum-bounces@lists.r-forge.r-project.org] on behalf of Smith, Matt [matt_smith@fws.gov]<br>
<b>Sent:</b> 03 November 2015 18:55<br>
<b>To:</b> adegenet-forum@lists.r-forge.r-project.org<br>
<b>Subject:</b> [adegenet-forum] replacing NAs<br>
</font><br>
</div>
<div></div>
<div>
<div dir="ltr">
<div style="font-size:12.8000001907349px">Hello,</div>
<div style="font-size:12.8000001907349px"><br>
</div>
<div style="font-size:12.8000001907349px">I am trying to create a genind object from a genepop file, then replace missing data with mean. Missing data is indicated by 0's in the genepop file. When I check for NAs, none are recognized. Why isn't adegenet recognizing
missing data in my genepop file?</div>
<div style="font-size:12.8000001907349px"><br>
</div>
<div style="font-size:12.8000001907349px">
<div>> Coho <- read.genepop("Input/20pop10loci.gen", ncode = 3L)</div>
<div><br>
</div>
<div> Converting data from a Genepop .gen file to a genind object... </div>
<div><br>
</div>
<div><br>
</div>
<div>File description: coho data dec 2014 </div>
<div><br>
</div>
<div>...done.</div>
<div><br>
</div>
<div>> sum(<a href="http://is.na/" target="_blank">is.na</a>(Coho$tab))</div>
<div>[1] 0</div>
<div>
<pre style="white-space:pre-wrap; color:rgb(0,0,0)"><br></pre>
<div>I'm new to this, so sorry for any duplicate posts.</div>
<div>Thank you!</div>
</div>
</div>
<div><br>
</div>
<br>
<div class="gmail_signature">
<div dir="ltr">
<div>
<div dir="ltr">
<div></div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</body>
</html>