[adegenet-forum] removing sites from genind/genpop objects

[Vikram Chhatre]

Is it possible to remove certain sites from a genind or a genpop object?  I
only wish to retain biallelic sites and a few sites with 3 alleles have
trickled into my data set.  I could of course go back to VCF and remove
those and work back through the pipeline, but a solution within Adegenet
would make life much easier.

> extra <- mygenind at loc.nall
> extra2 <- subset(extra, extra > 2)
> length(extra2)
5

> extra2
loc_156 loc_379 loc_1172 loc_1855 loc_2283
3           3          3            3            3
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