[adegenet-forum] seploc

[Jombart, Thibaut]

Hello, 

err... no everyone on this list is called this ;)

This is because you are using seploc on something which is not a genind object. I recommend updating your version of adegenet (current is 2.0.0) and checking the 'basics' tutorial for importing and handling data:

https://github.com/thibautjombart/adegenet/wiki/Tutorials

Cheers
Thibaut


________________________________________
From: adegenet-forum-bounces at lists.r-forge.r-project.org [adegenet-forum-bounces at lists.r-forge.r-project.org] on behalf of Basel Shaaban [Basel.Shaaban at ruhr-uni-bochum.de]
Sent: 14 July 2015 10:02
To: adegenet-forum at lists.r-forge.r-project.org
Subject: [adegenet-forum] seploc

Dear Thibaut Jombart,
I am Basel Shaaban, Master Student at Ruhr university Bochum. I am doing
right now my master thesis in population genetic field.
I need to calculate pairwise Fst for each locus, and my data are in
Fstat format, so I used a "adegenet" package to create a 'genind'
project and then I have set the "seploc" function to separate locus to
be able to calculate  pairwise Fst for each locus. However, after I set
my script I get this Error massage :

Error in (function (classes, fdef, mtable)  :
unable to find an inherited method for function ‘seploc’ for signature
‘"data.frame"’

and this is my R-script:

#read_fstat_file_to_create_genind_project:
B <- read.fstat("simulation_g1500_r10.dat")

#use_seploc_to_separate_locus:
B_seploc <- seploc(B, truenames=TRUE, res.type=c("genind", "matrix"))

can you please point out for me to the mistake I did?!

Best regards
Basel Shaaban
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