[adegenet-forum] function "orthobasis.listw" and global.rtest

[Stéphane Dray]

Hi,

I am not sure about which function you used. The function in adegenet 
seems to work (at least the example). If you used the function included 
in 'sedarJombart' on R-Forge (that included also the mspa function), 
this behavior is 'normal'. I will try to include both mspa and 
global/local tests this afternoon in adespatial.. It will solve the issues.

Cheers


Le 22/08/2015 14:54, Josie Jackson a écrit :
> Hello,
> I am trying to test if I have significant global structure in my sPCA 
> using the global rtest however I keep getting an error saying could 
> not find function orthobasis.listw. I see that it has been removed 
> from and put into adespatial. I have updated R and installed 
> adespatial but I am not sure how to get it working again.
> Any hints would be much appreciated!
>
> script:
> SnowyGtest <- global.rtest(objSnowy1sbsp2$tab,mySpcaSnowy1sbsp2$lw, k 
> = 1, nperm=99)
>
> Thanks very much,
> Josie
>
> -- 
> Josie D'Urban Jackson
>
> Ph.D student
> Department of Biology & Biochemistry
> University of Bath
> Claverton Down
> Bath
> BA2 7AY
> United Kingdom
>
> Cardiff University School of Biosciences,
> The Sir Martin Evans Building
> Museum Avenue
> Cardiff
> CF103AX
> United Kingdom
>
>
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-- 
Stéphane DRAY (stephane.dray at univ-lyon1.fr)
Laboratoire BBE-CNRS-UMR-5558, Univ. C. Bernard - Lyon I
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