[adegenet-forum] read.genepop (adegenet 2.0.0)

Chris Hollenbeck chollenbeck07 at tamu.edu
Fri Aug 21 15:23:28 CEST 2015


I've seen a similar question on another thread, but I wasn't sure if this
exact issue has been addressed. It seems that the 'read.genepop' function
in adegenet 2.0 no longer has the option to specify the missing data
character string, with the result that missing data gets coded as an
allele. Is this an intentional feature of the new package? If so, I'm not
sure what is the best way to modify the genind object to change the missing
data 'alleles' to NAs.

Thank you in advance for your help.

- Chris
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