[adegenet-forum] FW: MSPA

[Genevieve Diedericks]

Hi Jombart,

I'm struggling to install sedarJombart and cannot seem to find the zip file
either (I've installed an older R version in the hopes of getting it
installed). Any advice?
Thank you.

Regards
Genevieve



On Thu, Jul 30, 2015 at 1:25 PM, Diedericks, G, Me <gend at sun.ac.za> <
gend at sun.ac.za> wrote:

>
> ------------------------------
> *From:* Jombart, Thibaut
> *Sent:* 30 July 2015 01:24:53 PM (UTC+02:00) Harare, Pretoria
> *To:* Diedericks, G, Me <gend at sun.ac.za>;
> adegenet-forum at lists.r-forge.r-project.org
> *Subject:* RE: MSPA
>
>
> The graph may be too large for your computer to handle? Rendering of large
> graphs is typically slow on R's graphic devices. How many nodes do you have?
>
> Best
> Thibaut
>
> ps: please keep the forum Cced
>
>
> ------------------------------
> *From:* Diedericks, G, Me <gend at sun.ac.za> [gend at sun.ac.za]
> *Sent:* 30 July 2015 12:07
> *To:* Jombart, Thibaut
> *Subject:* Re: MSPA
>
> Hi,
>
>
> Thanks for the speedy reply! I did as you suggested, but my R session
> keeps on bombing out or hanging (I am using Rstudio).
>
> Any suggestions on how to fix this?
>
>
> Thank you.
>
>
> Kind regards,
>
> Genevieve
>
>
>
> ------------------------------
> *From:* Jombart, Thibaut <t.jombart at imperial.ac.uk>
> *Sent:* 30 July 2015 12:37 PM
>
> *To:* Diedericks, G, Me <gend at sun.ac.za>;
> adegenet-forum at lists.R-forge.R-project.org
> *Subject:* RE: MSPA
>
> Hi there,
>
> if I remember well, chooseCN has an option to edit the graph manually /
> interactively. The interface is a bit clunky but it should do the trick.
>
> Just set the argument edit.nb=TRUE when creating your graph.
>
> Cheers
> Thibaut
>
>
> ------------------------------
> *From:* adegenet-forum-bounces at lists.r-forge.r-project.org [
> adegenet-forum-bounces at lists.r-forge.r-project.org] on behalf of
> Diedericks, G, Me <gend at sun.ac.za> [gend at sun.ac.za]
> *Sent:* 30 July 2015 10:24
> *To:* adegenet-forum at lists.R-forge.R-project.org
> *Cc:* Diedericks, G, Me <gend at sun.ac.za>
> *Subject:* [adegenet-forum] MSPA
>
> Good day,
>
>
> I'm trying to run a MSPA for a freshwater fish species, sampled at 10
> sites along a river. I have chosen the Delaunay Triangulation, but need to
> edit the connections as some of the sites are below a dam wall, so the fish
> cannot move back up the river. Could you please assist me with this?
>
>
> Kind regards,
>
> Genevieve
>
>
> * ------------------------------ Genevieve Diedericks PhD candidate ~
> Zoology Centre for Invasion Biology (C.I.B) Department of Botany & Zoology
> Stellenbosch University South Africa +27 (0) 21 808 4135
> <%2B27%20%280%29%2021%20808%204135> *
>
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