[adegenet-forum] Hybridize Function / df2genind error message

[Spencer Bruce]

Got it, thanks.

On Tue, Nov 4, 2014 at 7:20 AM, Jombart, Thibaut <t.jombart at imperial.ac.uk>
wrote:

>  Hi Spencer,
>
> you don't need to convert genind to data.frames - just subset individuals
> in the genind objects like you would in a matrix. Then, you can pool
> datasets with potentially different alleles using 'repool'.
>
> Cheers
> Thibaut
>  ------------------------------
> *From:* adegenet-forum-bounces at lists.r-forge.r-project.org [
> adegenet-forum-bounces at lists.r-forge.r-project.org] on behalf of Spencer
> Bruce [goatsrunfaster at gmail.com]
> *Sent:* 27 October 2014 13:57
> *To:* adegenet-forum at lists.r-forge.r-project.org
> *Subject:* [adegenet-forum] Hybridize Function / df2genind error message
>
>   Hello All,
>
>  After hybridizing two populations, I converted the genind file to at
> dataframe to randomly extract individuals. I then attempt to convert this
> data frame back into a genind file, but get the error message below:
>
>  > F1_G1 <- df2genind(randomF1)
> Error in df2genind(randomF1) :
>   2 alleles cannot be coded by a total of 19 characters
>
>  Im assuming this is because the "pop" column, instead of being coded by
> a number contains the text generated by the hybridize function
> "honnedaga-tdhybrids"
>
>  I tried to resolve this by using the following code, but ran into a
> second error message:
>
>  > randomF1$pop[randomF1$pop == "honnedaga-tdhybrids"] <- 1
> Warning message:
> In `[<-.factor`(`*tmp*`, randomF1$pop == "honnedaga-tdhybrids",  :
>   invalid factor level, NA generated
>
>  any idea how I might be able to fix this? Thanks in advance!!!
>
>  -Spencer
>
>  --
> Spencer A Bruce
> 200 Washington St.
> Troy, NY 12180
> 518 225 0787
>



-- 
Spencer A Bruce
113 Hill St.
Troy, NY 12180
518 225 0787
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